Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 KSR1-207ENST00000578981 748 ntTSL 4 BASIC16.3■□□□□ 0.2
CISHQ9NSE2 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CISHQ9NSE2 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CISHQ9NSE2 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CISHQ9NSE2 TPO-203ENST00000346956 2923 ntTSL 5 BASIC16.3■□□□□ 0.2
CISHQ9NSE2 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CISHQ9NSE2 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CISHQ9NSE2 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CISHQ9NSE2 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CISHQ9NSE2 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CISHQ9NSE2 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC16.3■□□□□ 0.2
CISHQ9NSE2 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.3■□□□□ 0.2
CISHQ9NSE2 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CISHQ9NSE2 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CISHQ9NSE2 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CISHQ9NSE2 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CISHQ9NSE2 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CISHQ9NSE2 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CISHQ9NSE2 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CISHQ9NSE2 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CISHQ9NSE2 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CISHQ9NSE2 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CISHQ9NSE2 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC16.29■□□□□ 0.2
CISHQ9NSE2 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CISHQ9NSE2 AL596257.1-201ENST00000641463 2694 ntBASIC16.29■□□□□ 0.2
CISHQ9NSE2 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CISHQ9NSE2 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CISHQ9NSE2 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC16.29■□□□□ 0.2
CISHQ9NSE2 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
CISHQ9NSE2 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CISHQ9NSE2 COPE-202ENST00000349893 948 ntTSL 2 BASIC16.29■□□□□ 0.2
CISHQ9NSE2 EDF1-203ENST00000371649 790 ntTSL 2 BASIC16.29■□□□□ 0.2
CISHQ9NSE2 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CISHQ9NSE2 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC16.29■□□□□ 0.2
CISHQ9NSE2 NME2P1-201ENST00000426182 414 ntBASIC16.29■□□□□ 0.2
CISHQ9NSE2 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC16.29■□□□□ 0.2
CISHQ9NSE2 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC16.29■□□□□ 0.2
CISHQ9NSE2 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CISHQ9NSE2 AC022137.2-201ENST00000503482 481 ntBASIC16.29■□□□□ 0.2
CISHQ9NSE2 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC16.29■□□□□ 0.2
CISHQ9NSE2 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC16.29■□□□□ 0.2
CISHQ9NSE2 AC132938.2-201ENST00000579188 680 ntBASIC16.29■□□□□ 0.2
CISHQ9NSE2 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC16.29■□□□□ 0.2
CISHQ9NSE2 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC16.29■□□□□ 0.2
CISHQ9NSE2 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC16.29■□□□□ 0.2
CISHQ9NSE2 AL591163.1-201ENST00000641757 987 ntBASIC16.29■□□□□ 0.2
CISHQ9NSE2 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC16.29■□□□□ 0.2
CISHQ9NSE2 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CISHQ9NSE2 AJ011931.1-201ENST00000618749 2492 ntBASIC16.29■□□□□ 0.2
CISHQ9NSE2 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CISHQ9NSE2 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CISHQ9NSE2 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CISHQ9NSE2 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CISHQ9NSE2 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CISHQ9NSE2 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CISHQ9NSE2 AL137783.1-201ENST00000623494 1896 ntBASIC16.29■□□□□ 0.2
CISHQ9NSE2 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CISHQ9NSE2 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CISHQ9NSE2 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.29■□□□□ 0.2
CISHQ9NSE2 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CISHQ9NSE2 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CISHQ9NSE2 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CISHQ9NSE2 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CISHQ9NSE2 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
CISHQ9NSE2 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CISHQ9NSE2 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CISHQ9NSE2 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CISHQ9NSE2 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC16.28■□□□□ 0.2
CISHQ9NSE2 AC067930.6-201ENST00000623257 4947 ntBASIC16.28■□□□□ 0.2
CISHQ9NSE2 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CISHQ9NSE2 RPS15-201ENST00000233609 534 ntTSL 2 BASIC16.28■□□□□ 0.2
CISHQ9NSE2 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CISHQ9NSE2 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CISHQ9NSE2 GRAP-202ENST00000395635 834 ntTSL 2 BASIC16.28■□□□□ 0.2
CISHQ9NSE2 PGGT1BP2-201ENST00000398621 1028 ntBASIC16.28■□□□□ 0.2
CISHQ9NSE2 AL512384.1-201ENST00000406683 331 ntBASIC16.28■□□□□ 0.2
CISHQ9NSE2 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC16.28■□□□□ 0.2
CISHQ9NSE2 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC16.28■□□□□ 0.2
CISHQ9NSE2 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC16.28■□□□□ 0.2
CISHQ9NSE2 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC16.28■□□□□ 0.2
CISHQ9NSE2 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
CISHQ9NSE2 TDH-203ENST00000531764 1110 ntBASIC16.28■□□□□ 0.2
CISHQ9NSE2 AC005225.4-201ENST00000557330 545 ntBASIC16.28■□□□□ 0.2
CISHQ9NSE2 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC16.28■□□□□ 0.2
CISHQ9NSE2 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.28■□□□□ 0.2
CISHQ9NSE2 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC16.28■□□□□ 0.2
CISHQ9NSE2 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC16.28■□□□□ 0.2
CISHQ9NSE2 RPS15-205ENST00000586686 562 ntTSL 5 BASIC16.28■□□□□ 0.2
CISHQ9NSE2 RPS15-208ENST00000591804 711 ntTSL 5 BASIC16.28■□□□□ 0.2
CISHQ9NSE2 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CISHQ9NSE2 IGHV3-72-202ENST00000621503 303 ntBASIC16.28■□□□□ 0.2
CISHQ9NSE2 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CISHQ9NSE2 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CISHQ9NSE2 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CISHQ9NSE2 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CISHQ9NSE2 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CISHQ9NSE2 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CISHQ9NSE2 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CISHQ9NSE2 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC16.28■□□□□ 0.2
CISHQ9NSE2 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms