Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
MMP28Q9H239 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
MMP28Q9H239 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
MMP28Q9H239 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
MMP28Q9H239 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC13.62□□□□□ -0.23
MMP28Q9H239 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC13.62□□□□□ -0.23
MMP28Q9H239 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
MMP28Q9H239 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
MMP28Q9H239 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
MMP28Q9H239 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
MMP28Q9H239 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
MMP28Q9H239 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
MMP28Q9H239 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
MMP28Q9H239 SLC6A6P1-201ENST00000413933 1850 ntBASIC13.62□□□□□ -0.23
MMP28Q9H239 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
MMP28Q9H239 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
MMP28Q9H239 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
MMP28Q9H239 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
MMP28Q9H239 NME2-201ENST00000393183 568 ntTSL 2 BASIC13.62□□□□□ -0.23
MMP28Q9H239 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
MMP28Q9H239 DHDH-204ENST00000523250 634 ntTSL 5 BASIC13.62□□□□□ -0.23
MMP28Q9H239 MAL2-202ENST00000531508 892 ntTSL 3 BASIC13.62□□□□□ -0.23
MMP28Q9H239 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC13.62□□□□□ -0.23
MMP28Q9H239 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC13.62□□□□□ -0.23
MMP28Q9H239 MPI-203ENST00000535694 1523 ntTSL 2 BASIC13.62□□□□□ -0.23
MMP28Q9H239 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
MMP28Q9H239 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC13.62□□□□□ -0.23
MMP28Q9H239 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
MMP28Q9H239 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
MMP28Q9H239 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
MMP28Q9H239 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
MMP28Q9H239 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
MMP28Q9H239 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
MMP28Q9H239 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC13.62□□□□□ -0.23
MMP28Q9H239 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC13.62□□□□□ -0.23
MMP28Q9H239 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC13.62□□□□□ -0.23
MMP28Q9H239 BCAR1-209ENST00000546196 1340 ntBASIC13.62□□□□□ -0.23
MMP28Q9H239 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
MMP28Q9H239 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
MMP28Q9H239 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
MMP28Q9H239 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC13.61□□□□□ -0.23
MMP28Q9H239 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC13.61□□□□□ -0.23
MMP28Q9H239 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
MMP28Q9H239 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
MMP28Q9H239 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
MMP28Q9H239 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MMP28Q9H239 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
MMP28Q9H239 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC13.61□□□□□ -0.23
MMP28Q9H239 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MMP28Q9H239 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MMP28Q9H239 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
MMP28Q9H239 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
MMP28Q9H239 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC13.61□□□□□ -0.23
MMP28Q9H239 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
MMP28Q9H239 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
MMP28Q9H239 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MMP28Q9H239 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
MMP28Q9H239 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC13.61□□□□□ -0.23
MMP28Q9H239 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
MMP28Q9H239 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
MMP28Q9H239 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
MMP28Q9H239 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC13.61□□□□□ -0.23
MMP28Q9H239 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
MMP28Q9H239 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC13.61□□□□□ -0.23
MMP28Q9H239 NUTM2HP-201ENST00000442076 2498 ntBASIC13.61□□□□□ -0.23
MMP28Q9H239 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MMP28Q9H239 AC023274.1-201ENST00000418278 595 ntBASIC13.61□□□□□ -0.23
MMP28Q9H239 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
MMP28Q9H239 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC13.61□□□□□ -0.23
MMP28Q9H239 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC13.61□□□□□ -0.23
MMP28Q9H239 FIS1-203ENST00000442303 631 ntTSL 3 BASIC13.61□□□□□ -0.23
MMP28Q9H239 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC13.61□□□□□ -0.23
MMP28Q9H239 DNAJB3-201ENST00000446806 729 ntBASIC13.61□□□□□ -0.23
MMP28Q9H239 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
MMP28Q9H239 AC112482.1-201ENST00000492080 688 ntBASIC13.61□□□□□ -0.23
MMP28Q9H239 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC13.61□□□□□ -0.23
MMP28Q9H239 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC13.61□□□□□ -0.23
MMP28Q9H239 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC13.61□□□□□ -0.23
MMP28Q9H239 RPL28-209ENST00000560055 670 ntTSL 3 BASIC13.61□□□□□ -0.23
MMP28Q9H239 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC13.61□□□□□ -0.23
MMP28Q9H239 AC018845.2-201ENST00000568326 409 ntBASIC13.61□□□□□ -0.23
MMP28Q9H239 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
MMP28Q9H239 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC13.61□□□□□ -0.23
MMP28Q9H239 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC13.61□□□□□ -0.23
MMP28Q9H239 AQP6-205ENST00000618286 829 ntTSL 5 BASIC13.61□□□□□ -0.23
MMP28Q9H239 HOTTIP_1.1-201ENST00000620415 57 ntBASIC13.61□□□□□ -0.23
MMP28Q9H239 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
MMP28Q9H239 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
MMP28Q9H239 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MMP28Q9H239 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
MMP28Q9H239 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC13.61□□□□□ -0.23
MMP28Q9H239 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC13.61□□□□□ -0.23
MMP28Q9H239 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MMP28Q9H239 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MMP28Q9H239 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MMP28Q9H239 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MMP28Q9H239 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MMP28Q9H239 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
MMP28Q9H239 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
MMP28Q9H239 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms