Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 KC6-205ENST00000599934 556 ntTSL 4 BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 HNRNPA1P63-201ENST00000427917 963 ntBASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 AC004898.1-201ENST00000451057 766 ntBASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 NCK2-206ENST00000522586 490 ntTSL 5 BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 AL451050.2-201ENST00000606967 682 ntBASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PAAF1Q9BRP4 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 HNRNPA1P32-201ENST00000396326 963 ntBASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 AC004945.1-201ENST00000416738 983 ntBASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 APOA2-204ENST00000464492 530 ntTSL 3 BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 TPI1-206ENST00000488464 791 ntTSL 5 BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PAAF1Q9BRP4 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms