Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 FOS-202ENST00000535987 1402 ntTSL 2 BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 POM121L8P-201ENST00000417732 1281 ntBASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 POM121L9P-203ENST00000441984 1285 ntBASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 AC007541.1-201ENST00000570282 1469 ntBASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 MGST3-203ENST00000367885 680 ntTSL 2 BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 AC087499.6-201ENST00000411576 835 ntBASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 NME6-203ENST00000415644 849 ntTSL 2 BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 IGHV3OR16-16-201ENST00000563644 343 ntBASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 MIR6775-201ENST00000617557 69 ntBASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SHROOM3Q8TF72 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 TP73-213ENST00000604479 1623 ntTSL 5 BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 LSM5-207ENST00000410044 687 ntTSL 3 BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 MIR5189-201ENST00000577370 114 ntBASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 AC244669.2-201ENST00000612320 853 ntBASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 AL033527.5-201ENST00000641382 801 ntBASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 AGER-206ENST00000375070 1463 ntTSL 5 BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC15.54■□□□□ 0.08
SHROOM3Q8TF72 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
SHROOM3Q8TF72 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
SHROOM3Q8TF72 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.53■□□□□ 0.08
SHROOM3Q8TF72 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SHROOM3Q8TF72 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SHROOM3Q8TF72 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SHROOM3Q8TF72 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SHROOM3Q8TF72 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC15.53■□□□□ 0.08
SHROOM3Q8TF72 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SHROOM3Q8TF72 AL138799.1-201ENST00000448213 1675 ntBASIC15.53■□□□□ 0.08
SHROOM3Q8TF72 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
SHROOM3Q8TF72 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC15.53■□□□□ 0.08
SHROOM3Q8TF72 AL645937.2-201ENST00000396808 931 ntBASIC15.53■□□□□ 0.08
SHROOM3Q8TF72 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms