Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
LIM2P55344 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC14.53□□□□□ -0.08
LIM2P55344 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 AC093525.8-201ENST00000624099 1342 ntBASIC14.53□□□□□ -0.08
LIM2P55344 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC14.53□□□□□ -0.08
LIM2P55344 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC14.53□□□□□ -0.08
LIM2P55344 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC14.53□□□□□ -0.08
LIM2P55344 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14.53□□□□□ -0.08
LIM2P55344 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC14.53□□□□□ -0.08
LIM2P55344 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC14.53□□□□□ -0.08
LIM2P55344 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC14.53□□□□□ -0.08
LIM2P55344 PAM16-204ENST00000571941 674 ntTSL 3 BASIC14.53□□□□□ -0.08
LIM2P55344 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC14.53□□□□□ -0.08
LIM2P55344 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.53□□□□□ -0.08
LIM2P55344 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC14.53□□□□□ -0.08
LIM2P55344 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC14.53□□□□□ -0.08
LIM2P55344 AL033527.5-201ENST00000641382 801 ntBASIC14.53□□□□□ -0.08
LIM2P55344 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.53□□□□□ -0.08
LIM2P55344 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.53□□□□□ -0.08
LIM2P55344 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.53□□□□□ -0.08
LIM2P55344 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
LIM2P55344 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
LIM2P55344 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIM2P55344 SNX18-202ENST00000343017 3140 ntBASIC14.52□□□□□ -0.08
LIM2P55344 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LIM2P55344 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC14.52□□□□□ -0.08
LIM2P55344 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
LIM2P55344 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
LIM2P55344 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.52□□□□□ -0.08
LIM2P55344 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.52□□□□□ -0.08
LIM2P55344 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
LIM2P55344 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
LIM2P55344 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
LIM2P55344 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
LIM2P55344 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
LIM2P55344 AC012508.2-201ENST00000567613 1472 ntBASIC14.52□□□□□ -0.08
LIM2P55344 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LIM2P55344 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
LIM2P55344 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LIM2P55344 WASH3P-207ENST00000560956 1394 ntBASIC14.52□□□□□ -0.08
LIM2P55344 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LIM2P55344 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LIM2P55344 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
LIM2P55344 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC14.52□□□□□ -0.09
LIM2P55344 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
LIM2P55344 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.52□□□□□ -0.09
LIM2P55344 AP006294.1-201ENST00000415407 339 ntBASIC14.52□□□□□ -0.09
LIM2P55344 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC14.52□□□□□ -0.09
LIM2P55344 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC14.52□□□□□ -0.09
LIM2P55344 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.52□□□□□ -0.09
LIM2P55344 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
LIM2P55344 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC14.52□□□□□ -0.09
LIM2P55344 ENPP7P5-201ENST00000541031 1031 ntBASIC14.52□□□□□ -0.09
LIM2P55344 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
LIM2P55344 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.52□□□□□ -0.09
LIM2P55344 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.52□□□□□ -0.09
LIM2P55344 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
LIM2P55344 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
LIM2P55344 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.52□□□□□ -0.09
LIM2P55344 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
LIM2P55344 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LIM2P55344 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
LIM2P55344 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LIM2P55344 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC14.52□□□□□ -0.09
LIM2P55344 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
LIM2P55344 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
LIM2P55344 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
LIM2P55344 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
LIM2P55344 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LIM2P55344 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
LIM2P55344 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC14.52□□□□□ -0.09
LIM2P55344 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LIM2P55344 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
LIM2P55344 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LIM2P55344 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms