Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC14.92□□□□□ -0.02
HNF4AP41235 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
HNF4AP41235 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HNF4AP41235 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
HNF4AP41235 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
HNF4AP41235 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HNF4AP41235 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HNF4AP41235 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HNF4AP41235 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HNF4AP41235 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HNF4AP41235 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.91□□□□□ -0.02
HNF4AP41235 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HNF4AP41235 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HNF4AP41235 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HNF4AP41235 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.91□□□□□ -0.02
HNF4AP41235 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HNF4AP41235 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
HNF4AP41235 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HNF4AP41235 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC14.91□□□□□ -0.02
HNF4AP41235 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
HNF4AP41235 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HNF4AP41235 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC14.91□□□□□ -0.02
HNF4AP41235 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
HNF4AP41235 AC012508.2-201ENST00000567613 1472 ntBASIC14.91□□□□□ -0.02
HNF4AP41235 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HNF4AP41235 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
HNF4AP41235 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HNF4AP41235 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HNF4AP41235 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.91□□□□□ -0.02
HNF4AP41235 MIR661-201ENST00000384842 89 ntBASIC14.91□□□□□ -0.02
HNF4AP41235 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
HNF4AP41235 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HNF4AP41235 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC14.91□□□□□ -0.02
HNF4AP41235 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC14.91□□□□□ -0.02
HNF4AP41235 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC14.91□□□□□ -0.02
HNF4AP41235 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC14.91□□□□□ -0.02
HNF4AP41235 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.91□□□□□ -0.02
HNF4AP41235 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC14.91□□□□□ -0.02
HNF4AP41235 AC023310.3-201ENST00000557027 670 ntBASIC14.91□□□□□ -0.02
HNF4AP41235 AC100756.1-201ENST00000562736 682 ntBASIC14.91□□□□□ -0.02
HNF4AP41235 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
HNF4AP41235 AC138749.3-201ENST00000567691 622 ntBASIC14.91□□□□□ -0.02
HNF4AP41235 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.91□□□□□ -0.02
HNF4AP41235 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.91□□□□□ -0.02
HNF4AP41235 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.91□□□□□ -0.02
HNF4AP41235 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC14.91□□□□□ -0.02
HNF4AP41235 RN7SL204P-201ENST00000582831 262 ntBASIC14.91□□□□□ -0.02
HNF4AP41235 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.91□□□□□ -0.02
HNF4AP41235 AC004233.3-201ENST00000607794 1269 ntBASIC14.91□□□□□ -0.02
HNF4AP41235 AC116165.1-201ENST00000611806 668 ntBASIC14.91□□□□□ -0.02
HNF4AP41235 AC009118.2-201ENST00000613275 655 ntBASIC14.91□□□□□ -0.02
HNF4AP41235 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HNF4AP41235 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.91□□□□□ -0.02
HNF4AP41235 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC14.91□□□□□ -0.02
HNF4AP41235 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.91□□□□□ -0.02
HNF4AP41235 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HNF4AP41235 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HNF4AP41235 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HNF4AP41235 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.91□□□□□ -0.02
HNF4AP41235 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.02
HNF4AP41235 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC14.91□□□□□ -0.02
HNF4AP41235 GSN-215ENST00000545652 2428 ntTSL 2 BASIC14.91□□□□□ -0.02
HNF4AP41235 LINC01101-201ENST00000622953 1884 ntBASIC14.91□□□□□ -0.02
HNF4AP41235 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HNF4AP41235 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.9□□□□□ -0.02
HNF4AP41235 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HNF4AP41235 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
HNF4AP41235 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.9□□□□□ -0.02
HNF4AP41235 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC14.9□□□□□ -0.02
HNF4AP41235 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HNF4AP41235 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
HNF4AP41235 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
HNF4AP41235 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC14.9□□□□□ -0.02
HNF4AP41235 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
HNF4AP41235 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HNF4AP41235 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
HNF4AP41235 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
HNF4AP41235 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.9□□□□□ -0.02
HNF4AP41235 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HNF4AP41235 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HNF4AP41235 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HNF4AP41235 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HNF4AP41235 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
HNF4AP41235 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC14.9□□□□□ -0.02
HNF4AP41235 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HNF4AP41235 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HNF4AP41235 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
HNF4AP41235 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HNF4AP41235 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HNF4AP41235 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.9□□□□□ -0.02
HNF4AP41235 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
HNF4AP41235 AL158212.4-201ENST00000624062 1286 ntBASIC14.9□□□□□ -0.02
HNF4AP41235 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.9□□□□□ -0.02
HNF4AP41235 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HNF4AP41235 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC14.9□□□□□ -0.02
HNF4AP41235 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
HNF4AP41235 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.9□□□□□ -0.02
HNF4AP41235 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HNF4AP41235 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
HNF4AP41235 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms