Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC15.04■□□□□ -0
SHMT2P34897 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC15.04■□□□□ -0
SHMT2P34897 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC15.04■□□□□ -0
SHMT2P34897 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC15.04■□□□□ -0
SHMT2P34897 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC15.04■□□□□ -0
SHMT2P34897 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC15.04■□□□□ -0
SHMT2P34897 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
SHMT2P34897 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
SHMT2P34897 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC15.04■□□□□ -0
SHMT2P34897 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SHMT2P34897 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
SHMT2P34897 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
SHMT2P34897 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC15.04■□□□□ -0
SHMT2P34897 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
SHMT2P34897 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.04■□□□□ -0
SHMT2P34897 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.04■□□□□ -0
SHMT2P34897 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.04■□□□□ -0
SHMT2P34897 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
SHMT2P34897 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.04■□□□□ -0
SHMT2P34897 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
SHMT2P34897 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SHMT2P34897 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.04■□□□□ -0
SHMT2P34897 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.03■□□□□ -0
SHMT2P34897 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC15.03■□□□□ -0
SHMT2P34897 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.03■□□□□ -0
SHMT2P34897 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SHMT2P34897 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC15.03■□□□□ -0
SHMT2P34897 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SHMT2P34897 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
SHMT2P34897 AMT-224ENST00000635808 1610 ntTSL 5 BASIC15.03■□□□□ -0
SHMT2P34897 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
SHMT2P34897 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC15.03■□□□□ -0
SHMT2P34897 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC15.03■□□□□ -0
SHMT2P34897 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
SHMT2P34897 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SHMT2P34897 HNRNPA1P48-201ENST00000562726 1377 ntBASIC15.03■□□□□ -0
SHMT2P34897 LINC00528-201ENST00000600723 2160 ntBASIC15.03■□□□□ -0
SHMT2P34897 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC15.03■□□□□ -0
SHMT2P34897 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC15.03■□□□□ -0
SHMT2P34897 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC15.03■□□□□ -0
SHMT2P34897 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SHMT2P34897 NME2P1-201ENST00000426182 414 ntBASIC15.03■□□□□ -0
SHMT2P34897 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
SHMT2P34897 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC15.03■□□□□ -0
SHMT2P34897 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC15.03■□□□□ -0
SHMT2P34897 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC15.03■□□□□ -0
SHMT2P34897 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
SHMT2P34897 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC15.03■□□□□ -0
SHMT2P34897 POLE2-203ENST00000553805 496 ntTSL 2 BASIC15.03■□□□□ -0
SHMT2P34897 AL359711.2-201ENST00000563105 872 ntBASIC15.03■□□□□ -0
SHMT2P34897 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC15.03■□□□□ -0
SHMT2P34897 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC15.03■□□□□ -0
SHMT2P34897 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC15.03■□□□□ -0
SHMT2P34897 AC093813.1-201ENST00000605066 256 ntBASIC15.03■□□□□ -0
SHMT2P34897 SRP9-204ENST00000619790 377 ntTSL 2 BASIC15.03■□□□□ -0
SHMT2P34897 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC15.03■□□□□ -0
SHMT2P34897 AL033527.5-201ENST00000641382 801 ntBASIC15.03■□□□□ -0
SHMT2P34897 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SHMT2P34897 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
SHMT2P34897 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC15.03■□□□□ -0
SHMT2P34897 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SHMT2P34897 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SHMT2P34897 LINC01101-201ENST00000622953 1884 ntBASIC15.03■□□□□ -0
SHMT2P34897 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SHMT2P34897 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC15.03■□□□□ -0
SHMT2P34897 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC15.03■□□□□ -0
SHMT2P34897 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15.03■□□□□ -0
SHMT2P34897 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SHMT2P34897 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SHMT2P34897 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.03■□□□□ -0
SHMT2P34897 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.03■□□□□ -0
SHMT2P34897 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
SHMT2P34897 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
SHMT2P34897 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.02■□□□□ -0
SHMT2P34897 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SHMT2P34897 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC15.02■□□□□ -0
SHMT2P34897 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC15.02■□□□□ -0
SHMT2P34897 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SHMT2P34897 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SHMT2P34897 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC15.02■□□□□ -0
SHMT2P34897 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
SHMT2P34897 DRD5P1-201ENST00000456605 1438 ntBASIC15.02■□□□□ -0
SHMT2P34897 KRT8P22-201ENST00000562317 1415 ntBASIC15.02■□□□□ -0
SHMT2P34897 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC15.02■□□□□ -0
SHMT2P34897 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SHMT2P34897 AC090616.6-203ENST00000579186 1945 ntBASIC15.02■□□□□ -0
SHMT2P34897 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.02■□□□□ -0
SHMT2P34897 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
SHMT2P34897 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC15.02■□□□□ -0
SHMT2P34897 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.02■□□□□ -0
SHMT2P34897 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.02■□□□□ -0
SHMT2P34897 AC067930.6-201ENST00000623257 4947 ntBASIC15.02■□□□□ -0
SHMT2P34897 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
SHMT2P34897 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC15.02■□□□□ -0
SHMT2P34897 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SHMT2P34897 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC15.02■□□□□ -0
SHMT2P34897 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC15.02■□□□□ -0
SHMT2P34897 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC15.02■□□□□ -0
SHMT2P34897 KRT17P7-201ENST00000451704 1104 ntBASIC15.02■□□□□ -0
SHMT2P34897 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.02■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms