Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
XRCC1P18887 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC15.33■□□□□ 0.04
XRCC1P18887 RN7SL752P-201ENST00000463779 287 ntBASIC15.33■□□□□ 0.04
XRCC1P18887 AC011495.1-201ENST00000498085 584 ntBASIC15.33■□□□□ 0.04
XRCC1P18887 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC15.33■□□□□ 0.04
XRCC1P18887 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC15.33■□□□□ 0.04
XRCC1P18887 WASH4P-201ENST00000564273 1246 ntBASIC15.33■□□□□ 0.04
XRCC1P18887 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.33■□□□□ 0.04
XRCC1P18887 CTBP2P3-201ENST00000585629 1255 ntBASIC15.33■□□□□ 0.04
XRCC1P18887 MIR8072-201ENST00000614241 80 ntBASIC15.33■□□□□ 0.04
XRCC1P18887 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC15.33■□□□□ 0.04
XRCC1P18887 USP28-214ENST00000545540 3431 ntTSL 2 BASIC15.33■□□□□ 0.04
XRCC1P18887 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
XRCC1P18887 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
XRCC1P18887 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC15.33■□□□□ 0.04
XRCC1P18887 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
XRCC1P18887 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
XRCC1P18887 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
XRCC1P18887 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
XRCC1P18887 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
XRCC1P18887 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
XRCC1P18887 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
XRCC1P18887 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
XRCC1P18887 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
XRCC1P18887 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
XRCC1P18887 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
XRCC1P18887 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
XRCC1P18887 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
XRCC1P18887 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.32■□□□□ 0.04
XRCC1P18887 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
XRCC1P18887 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
XRCC1P18887 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
XRCC1P18887 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.32■□□□□ 0.04
XRCC1P18887 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
XRCC1P18887 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.32■□□□□ 0.04
XRCC1P18887 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.32■□□□□ 0.04
XRCC1P18887 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
XRCC1P18887 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
XRCC1P18887 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
XRCC1P18887 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
XRCC1P18887 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC15.32■□□□□ 0.04
XRCC1P18887 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC15.32■□□□□ 0.04
XRCC1P18887 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
XRCC1P18887 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC15.32■□□□□ 0.04
XRCC1P18887 WBP2-203ENST00000433525 928 ntTSL 2 BASIC15.32■□□□□ 0.04
XRCC1P18887 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
XRCC1P18887 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC15.32■□□□□ 0.04
XRCC1P18887 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC15.32■□□□□ 0.04
XRCC1P18887 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC15.32■□□□□ 0.04
XRCC1P18887 CFL1-212ENST00000531413 636 ntTSL 3 BASIC15.32■□□□□ 0.04
XRCC1P18887 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
XRCC1P18887 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC15.32■□□□□ 0.04
XRCC1P18887 AC092552.1-201ENST00000547243 906 ntBASIC15.32■□□□□ 0.04
XRCC1P18887 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC15.32■□□□□ 0.04
XRCC1P18887 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC15.32■□□□□ 0.04
XRCC1P18887 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC15.32■□□□□ 0.04
XRCC1P18887 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
XRCC1P18887 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
XRCC1P18887 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC15.32■□□□□ 0.04
XRCC1P18887 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
XRCC1P18887 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
XRCC1P18887 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
XRCC1P18887 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
XRCC1P18887 KRT8P44-201ENST00000441609 1350 ntBASIC15.32■□□□□ 0.04
XRCC1P18887 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC15.32■□□□□ 0.04
XRCC1P18887 CLK3P2-201ENST00000427566 1453 ntBASIC15.32■□□□□ 0.04
XRCC1P18887 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
XRCC1P18887 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
XRCC1P18887 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
XRCC1P18887 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC15.32■□□□□ 0.04
XRCC1P18887 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
XRCC1P18887 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
XRCC1P18887 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.32■□□□□ 0.04
XRCC1P18887 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC15.32■□□□□ 0.04
XRCC1P18887 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
XRCC1P18887 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC15.32■□□□□ 0.04
XRCC1P18887 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
XRCC1P18887 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
XRCC1P18887 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
XRCC1P18887 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.31■□□□□ 0.04
XRCC1P18887 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.31■□□□□ 0.04
XRCC1P18887 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
XRCC1P18887 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC15.31■□□□□ 0.04
XRCC1P18887 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
XRCC1P18887 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
XRCC1P18887 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
XRCC1P18887 AC068587.6-202ENST00000641839 5619 ntBASIC15.31■□□□□ 0.04
XRCC1P18887 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
XRCC1P18887 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
XRCC1P18887 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
XRCC1P18887 FGD5P1-202ENST00000614866 2498 ntBASIC15.31■□□□□ 0.04
XRCC1P18887 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
XRCC1P18887 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
XRCC1P18887 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
XRCC1P18887 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC15.31■□□□□ 0.04
XRCC1P18887 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC15.31■□□□□ 0.04
XRCC1P18887 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC15.31■□□□□ 0.04
XRCC1P18887 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC15.31■□□□□ 0.04
XRCC1P18887 KRT17P7-201ENST00000451704 1104 ntBASIC15.31■□□□□ 0.04
XRCC1P18887 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms