Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC16.17■□□□□ 0.18
RTN3O95197 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RTN3O95197 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RTN3O95197 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RTN3O95197 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
RTN3O95197 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RTN3O95197 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC16.17■□□□□ 0.18
RTN3O95197 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RTN3O95197 AC092933.1-201ENST00000393644 945 ntBASIC16.17■□□□□ 0.18
RTN3O95197 MIR1909-201ENST00000411312 80 ntBASIC16.17■□□□□ 0.18
RTN3O95197 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RTN3O95197 AC114812.1-204ENST00000449669 728 ntBASIC16.17■□□□□ 0.18
RTN3O95197 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
RTN3O95197 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC16.17■□□□□ 0.18
RTN3O95197 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC16.17■□□□□ 0.18
RTN3O95197 USP31-203ENST00000567975 2142 ntTSL 2 BASIC16.17■□□□□ 0.18
RTN3O95197 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC16.17■□□□□ 0.18
RTN3O95197 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RTN3O95197 MIR6752-201ENST00000618442 71 ntBASIC16.17■□□□□ 0.18
RTN3O95197 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
RTN3O95197 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
RTN3O95197 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RTN3O95197 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
RTN3O95197 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
RTN3O95197 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RTN3O95197 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RTN3O95197 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RTN3O95197 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC16.17■□□□□ 0.18
RTN3O95197 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RTN3O95197 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RTN3O95197 MSTO2P-201ENST00000314835 1709 ntBASIC16.16■□□□□ 0.18
RTN3O95197 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.16■□□□□ 0.18
RTN3O95197 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.16■□□□□ 0.18
RTN3O95197 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
RTN3O95197 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC16.16■□□□□ 0.18
RTN3O95197 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
RTN3O95197 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.16■□□□□ 0.18
RTN3O95197 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC16.16■□□□□ 0.18
RTN3O95197 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 MIR658-201ENST00000385210 100 ntBASIC16.16■□□□□ 0.18
RTN3O95197 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC16.16■□□□□ 0.18
RTN3O95197 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC16.16■□□□□ 0.18
RTN3O95197 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC16.16■□□□□ 0.18
RTN3O95197 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC16.16■□□□□ 0.18
RTN3O95197 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC16.16■□□□□ 0.18
RTN3O95197 AC104989.1-201ENST00000519711 778 ntBASIC16.16■□□□□ 0.18
RTN3O95197 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC16.16■□□□□ 0.18
RTN3O95197 RPL28-206ENST00000558752 671 ntTSL 3 BASIC16.16■□□□□ 0.18
RTN3O95197 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
RTN3O95197 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC16.16■□□□□ 0.18
RTN3O95197 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
RTN3O95197 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC16.16■□□□□ 0.18
RTN3O95197 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
RTN3O95197 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
RTN3O95197 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
RTN3O95197 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RTN3O95197 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC16.16■□□□□ 0.18
RTN3O95197 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RTN3O95197 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
RTN3O95197 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
RTN3O95197 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RTN3O95197 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
RTN3O95197 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RTN3O95197 AC026748.1-201ENST00000624349 3251 ntBASIC16.15■□□□□ 0.18
RTN3O95197 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC16.15■□□□□ 0.18
RTN3O95197 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
RTN3O95197 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
RTN3O95197 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RTN3O95197 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.15■□□□□ 0.18
RTN3O95197 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC16.15■□□□□ 0.18
RTN3O95197 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
RTN3O95197 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RTN3O95197 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RTN3O95197 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms