Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.05
SHOX2O60902 FUT3-201ENST00000303225 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SHOX2O60902 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
SHOX2O60902 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC15.33■□□□□ 0.05
SHOX2O60902 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC15.33■□□□□ 0.05
SHOX2O60902 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
SHOX2O60902 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SHOX2O60902 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
SHOX2O60902 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SHOX2O60902 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHOX2O60902 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
SHOX2O60902 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHOX2O60902 NME1-209ENST00000511355 1645 ntTSL 5 BASIC15.33■□□□□ 0.04
SHOX2O60902 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHOX2O60902 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHOX2O60902 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHOX2O60902 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.33■□□□□ 0.04
SHOX2O60902 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHOX2O60902 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHOX2O60902 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC15.33■□□□□ 0.04
SHOX2O60902 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC15.33■□□□□ 0.04
SHOX2O60902 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SHOX2O60902 AC021087.4-201ENST00000563761 564 ntBASIC15.33■□□□□ 0.04
SHOX2O60902 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SHOX2O60902 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHOX2O60902 AL009183.1-201ENST00000603760 355 ntBASIC15.33■□□□□ 0.04
SHOX2O60902 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.33■□□□□ 0.04
SHOX2O60902 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
SHOX2O60902 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC15.33■□□□□ 0.04
SHOX2O60902 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.33■□□□□ 0.04
SHOX2O60902 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHOX2O60902 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
SHOX2O60902 ARHGEF4-217ENST00000611048 3486 ntTSL 5 BASIC15.33■□□□□ 0.04
SHOX2O60902 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC15.33■□□□□ 0.04
SHOX2O60902 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC15.33■□□□□ 0.04
SHOX2O60902 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHOX2O60902 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHOX2O60902 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHOX2O60902 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHOX2O60902 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
SHOX2O60902 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
SHOX2O60902 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC15.33■□□□□ 0.04
SHOX2O60902 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHOX2O60902 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHOX2O60902 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC15.33■□□□□ 0.04
SHOX2O60902 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHOX2O60902 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SHOX2O60902 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
SHOX2O60902 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHOX2O60902 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC15.32■□□□□ 0.04
SHOX2O60902 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHOX2O60902 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHOX2O60902 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.32■□□□□ 0.04
SHOX2O60902 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC15.32■□□□□ 0.04
SHOX2O60902 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
SHOX2O60902 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
SHOX2O60902 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
SHOX2O60902 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
SHOX2O60902 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
SHOX2O60902 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC15.32■□□□□ 0.04
SHOX2O60902 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHOX2O60902 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.32■□□□□ 0.04
SHOX2O60902 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC15.32■□□□□ 0.04
SHOX2O60902 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
SHOX2O60902 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHOX2O60902 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
SHOX2O60902 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHOX2O60902 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SHOX2O60902 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHOX2O60902 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHOX2O60902 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SHOX2O60902 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHOX2O60902 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHOX2O60902 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SHOX2O60902 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
SHOX2O60902 KRT18P27-201ENST00000427733 1299 ntBASIC15.32■□□□□ 0.04
SHOX2O60902 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.32■□□□□ 0.04
SHOX2O60902 IGHV3-65-201ENST00000523210 341 ntBASIC15.32■□□□□ 0.04
SHOX2O60902 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
SHOX2O60902 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC15.32■□□□□ 0.04
SHOX2O60902 TPM1-218ENST00000559281 851 ntTSL 5 BASIC15.32■□□□□ 0.04
SHOX2O60902 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC15.32■□□□□ 0.04
SHOX2O60902 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC15.32■□□□□ 0.04
SHOX2O60902 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SHOX2O60902 AC024267.1-201ENST00000582320 895 ntBASIC15.32■□□□□ 0.04
SHOX2O60902 AL121772.3-201ENST00000610840 674 ntBASIC15.32■□□□□ 0.04
SHOX2O60902 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC15.32■□□□□ 0.04
SHOX2O60902 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHOX2O60902 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHOX2O60902 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHOX2O60902 TSN-212ENST00000536142 3328 ntTSL 2 BASIC15.32■□□□□ 0.04
SHOX2O60902 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SHOX2O60902 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC15.32■□□□□ 0.04
SHOX2O60902 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SHOX2O60902 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC15.32■□□□□ 0.04
SHOX2O60902 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
SHOX2O60902 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC15.32■□□□□ 0.04
SHOX2O60902 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC15.32■□□□□ 0.04
SHOX2O60902 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHOX2O60902 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms