Protein–RNA interactions for Protein: Q9Y6Z2

LINC01558, Uncharacterized protein encoded by LINC01558, humanhuman

Predictions only

Length 57 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01558Q9Y6Z2 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
LINC01558Q9Y6Z2 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
LINC01558Q9Y6Z2 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC01558Q9Y6Z2 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC01558Q9Y6Z2 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC12.12□□□□□ -0.47
LINC01558Q9Y6Z2 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
LINC01558Q9Y6Z2 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
LINC01558Q9Y6Z2 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC12.11□□□□□ -0.47
LINC01558Q9Y6Z2 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC01558Q9Y6Z2 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC12.11□□□□□ -0.47
LINC01558Q9Y6Z2 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
LINC01558Q9Y6Z2 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC01558Q9Y6Z2 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
LINC01558Q9Y6Z2 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC01558Q9Y6Z2 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC01558Q9Y6Z2 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC12.11□□□□□ -0.47
LINC01558Q9Y6Z2 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC12.11□□□□□ -0.47
LINC01558Q9Y6Z2 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC01558Q9Y6Z2 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC01558Q9Y6Z2 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC01558Q9Y6Z2 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC01558Q9Y6Z2 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC01558Q9Y6Z2 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
LINC01558Q9Y6Z2 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC01558Q9Y6Z2 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC01558Q9Y6Z2 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC12.1□□□□□ -0.47
LINC01558Q9Y6Z2 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC01558Q9Y6Z2 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC01558Q9Y6Z2 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
LINC01558Q9Y6Z2 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC12.1□□□□□ -0.47
LINC01558Q9Y6Z2 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC01558Q9Y6Z2 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC01558Q9Y6Z2 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
LINC01558Q9Y6Z2 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC01558Q9Y6Z2 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC01558Q9Y6Z2 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
LINC01558Q9Y6Z2 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC01558Q9Y6Z2 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC01558Q9Y6Z2 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC12.09□□□□□ -0.47
LINC01558Q9Y6Z2 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC12.09□□□□□ -0.47
LINC01558Q9Y6Z2 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
LINC01558Q9Y6Z2 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC01558Q9Y6Z2 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC12.09□□□□□ -0.47
LINC01558Q9Y6Z2 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC12.09□□□□□ -0.47
LINC01558Q9Y6Z2 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
LINC01558Q9Y6Z2 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
LINC01558Q9Y6Z2 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC12.09□□□□□ -0.47
LINC01558Q9Y6Z2 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC01558Q9Y6Z2 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC01558Q9Y6Z2 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
LINC01558Q9Y6Z2 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
LINC01558Q9Y6Z2 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
LINC01558Q9Y6Z2 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC12.08□□□□□ -0.48
LINC01558Q9Y6Z2 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC01558Q9Y6Z2 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC12.08□□□□□ -0.48
LINC01558Q9Y6Z2 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
LINC01558Q9Y6Z2 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC01558Q9Y6Z2 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC01558Q9Y6Z2 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC01558Q9Y6Z2 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
LINC01558Q9Y6Z2 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC01558Q9Y6Z2 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC01558Q9Y6Z2 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
LINC01558Q9Y6Z2 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC01558Q9Y6Z2 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC12.07□□□□□ -0.48
LINC01558Q9Y6Z2 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
LINC01558Q9Y6Z2 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC12.07□□□□□ -0.48
LINC01558Q9Y6Z2 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC01558Q9Y6Z2 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC01558Q9Y6Z2 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC01558Q9Y6Z2 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
LINC01558Q9Y6Z2 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC01558Q9Y6Z2 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
LINC01558Q9Y6Z2 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
LINC01558Q9Y6Z2 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
LINC01558Q9Y6Z2 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
LINC01558Q9Y6Z2 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC01558Q9Y6Z2 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
LINC01558Q9Y6Z2 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC12.06□□□□□ -0.48
LINC01558Q9Y6Z2 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
LINC01558Q9Y6Z2 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC12.06□□□□□ -0.48
LINC01558Q9Y6Z2 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC01558Q9Y6Z2 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
LINC01558Q9Y6Z2 MVK-208ENST00000539696 608 ntTSL 5 BASIC12.06□□□□□ -0.48
LINC01558Q9Y6Z2 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
LINC01558Q9Y6Z2 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
LINC01558Q9Y6Z2 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC01558Q9Y6Z2 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC01558Q9Y6Z2 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
LINC01558Q9Y6Z2 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC01558Q9Y6Z2 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC01558Q9Y6Z2 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
LINC01558Q9Y6Z2 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC01558Q9Y6Z2 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC01558Q9Y6Z2 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC01558Q9Y6Z2 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
LINC01558Q9Y6Z2 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
LINC01558Q9Y6Z2 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC01558Q9Y6Z2 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC01558Q9Y6Z2 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms