Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
AP4S1Q9Y587 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
AP4S1Q9Y587 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
AP4S1Q9Y587 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC21.79■■□□□ 1.08
AP4S1Q9Y587 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
AP4S1Q9Y587 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
AP4S1Q9Y587 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
AP4S1Q9Y587 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
AP4S1Q9Y587 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
AP4S1Q9Y587 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
AP4S1Q9Y587 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
AP4S1Q9Y587 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
AP4S1Q9Y587 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC21.78■■□□□ 1.08
AP4S1Q9Y587 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
AP4S1Q9Y587 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.78■■□□□ 1.08
AP4S1Q9Y587 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
AP4S1Q9Y587 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
AP4S1Q9Y587 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
AP4S1Q9Y587 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
AP4S1Q9Y587 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.77■■□□□ 1.08
AP4S1Q9Y587 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
AP4S1Q9Y587 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
AP4S1Q9Y587 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
AP4S1Q9Y587 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.08
AP4S1Q9Y587 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
AP4S1Q9Y587 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
AP4S1Q9Y587 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
AP4S1Q9Y587 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC21.77■■□□□ 1.08
AP4S1Q9Y587 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.77■■□□□ 1.08
AP4S1Q9Y587 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
AP4S1Q9Y587 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
AP4S1Q9Y587 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
AP4S1Q9Y587 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
AP4S1Q9Y587 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.76■■□□□ 1.07
AP4S1Q9Y587 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
AP4S1Q9Y587 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC21.76■■□□□ 1.07
AP4S1Q9Y587 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
AP4S1Q9Y587 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
AP4S1Q9Y587 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
AP4S1Q9Y587 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
AP4S1Q9Y587 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
AP4S1Q9Y587 C1orf229-201ENST00000623686 2258 ntBASIC21.76■■□□□ 1.07
AP4S1Q9Y587 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.76■■□□□ 1.07
AP4S1Q9Y587 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
AP4S1Q9Y587 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
AP4S1Q9Y587 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
AP4S1Q9Y587 LINC00526-201ENST00000581067 1875 ntBASIC21.75■■□□□ 1.07
AP4S1Q9Y587 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
AP4S1Q9Y587 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.75■■□□□ 1.07
AP4S1Q9Y587 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
AP4S1Q9Y587 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
AP4S1Q9Y587 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
AP4S1Q9Y587 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
AP4S1Q9Y587 HLA-V-202ENST00000446817 847 ntBASIC21.75■■□□□ 1.07
AP4S1Q9Y587 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
AP4S1Q9Y587 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
AP4S1Q9Y587 LINC01971-201ENST00000617888 1048 ntBASIC21.75■■□□□ 1.07
AP4S1Q9Y587 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.74■■□□□ 1.07
AP4S1Q9Y587 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
AP4S1Q9Y587 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
AP4S1Q9Y587 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
AP4S1Q9Y587 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
AP4S1Q9Y587 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.74■■□□□ 1.07
AP4S1Q9Y587 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
AP4S1Q9Y587 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
AP4S1Q9Y587 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
AP4S1Q9Y587 ANOS2P-203ENST00000472227 1816 ntBASIC21.73■■□□□ 1.07
AP4S1Q9Y587 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.73■■□□□ 1.07
AP4S1Q9Y587 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
AP4S1Q9Y587 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
AP4S1Q9Y587 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
AP4S1Q9Y587 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
AP4S1Q9Y587 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
AP4S1Q9Y587 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
AP4S1Q9Y587 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
AP4S1Q9Y587 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
AP4S1Q9Y587 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
AP4S1Q9Y587 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
AP4S1Q9Y587 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.73■■□□□ 1.07
AP4S1Q9Y587 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
AP4S1Q9Y587 AL162393.1-201ENST00000437852 946 ntBASIC21.72■■□□□ 1.07
AP4S1Q9Y587 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
AP4S1Q9Y587 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
AP4S1Q9Y587 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
AP4S1Q9Y587 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
AP4S1Q9Y587 AC126177.7-201ENST00000547904 679 ntBASIC21.71■■□□□ 1.07
AP4S1Q9Y587 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
AP4S1Q9Y587 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
AP4S1Q9Y587 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
AP4S1Q9Y587 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.71■■□□□ 1.07
AP4S1Q9Y587 AC127496.7-201ENST00000625110 1798 ntBASIC21.71■■□□□ 1.07
AP4S1Q9Y587 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
AP4S1Q9Y587 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
AP4S1Q9Y587 DUSP8P3-201ENST00000399571 1760 ntBASIC21.7■■□□□ 1.06
AP4S1Q9Y587 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC21.7■■□□□ 1.06
AP4S1Q9Y587 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC21.7■■□□□ 1.06
AP4S1Q9Y587 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.7■■□□□ 1.06
AP4S1Q9Y587 AC137767.1-201ENST00000602918 1920 ntBASIC21.7■■□□□ 1.06
AP4S1Q9Y587 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.7■■□□□ 1.06
AP4S1Q9Y587 GUSBP5-202ENST00000510805 1989 ntBASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms