Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 AC138932.3-201ENST00000567634 1902 ntBASIC25.22■■□□□ 1.63
CDT1Q9H211 HLA-L-211ENST00000482052 1765 ntBASIC25.21■■□□□ 1.63
CDT1Q9H211 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CDT1Q9H211 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
CDT1Q9H211 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
CDT1Q9H211 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC25.21■■□□□ 1.63
CDT1Q9H211 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC25.21■■□□□ 1.63
CDT1Q9H211 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CDT1Q9H211 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC25.2■■□□□ 1.63
CDT1Q9H211 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
CDT1Q9H211 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
CDT1Q9H211 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
CDT1Q9H211 AC004448.1-201ENST00000458332 883 ntBASIC25.2■■□□□ 1.62
CDT1Q9H211 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC25.2■■□□□ 1.62
CDT1Q9H211 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC25.2■■□□□ 1.62
CDT1Q9H211 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC25.2■■□□□ 1.62
CDT1Q9H211 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
CDT1Q9H211 LSM7-203ENST00000585409 512 ntTSL 2 BASIC25.19■■□□□ 1.62
CDT1Q9H211 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC25.19■■□□□ 1.62
CDT1Q9H211 AP003733.4-201ENST00000623785 1697 ntBASIC25.19■■□□□ 1.62
CDT1Q9H211 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC25.18■■□□□ 1.62
CDT1Q9H211 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CDT1Q9H211 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CDT1Q9H211 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CDT1Q9H211 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC25.18■■□□□ 1.62
CDT1Q9H211 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CDT1Q9H211 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC25.18■■□□□ 1.62
CDT1Q9H211 EXOG-217ENST00000630638 197 ntTSL 5 BASIC25.18■■□□□ 1.62
CDT1Q9H211 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC25.18■■□□□ 1.62
CDT1Q9H211 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC25.18■■□□□ 1.62
CDT1Q9H211 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CDT1Q9H211 CLTA-206ENST00000466396 695 ntTSL 2 BASIC25.17■■□□□ 1.62
CDT1Q9H211 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC25.17■■□□□ 1.62
CDT1Q9H211 MIR6724-1-201ENST00000616420 92 ntBASIC25.17■■□□□ 1.62
CDT1Q9H211 MIR6724-2-201ENST00000616483 92 ntBASIC25.17■■□□□ 1.62
CDT1Q9H211 MIR6724-4-201ENST00000617390 92 ntBASIC25.17■■□□□ 1.62
CDT1Q9H211 MIR6724-3-201ENST00000622482 92 ntBASIC25.17■■□□□ 1.62
CDT1Q9H211 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CDT1Q9H211 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CDT1Q9H211 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CDT1Q9H211 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC25.16■■□□□ 1.62
CDT1Q9H211 CD72-202ENST00000378430 585 ntTSL 3 BASIC25.16■■□□□ 1.62
CDT1Q9H211 MIR6722-201ENST00000617286 78 ntBASIC25.16■■□□□ 1.62
CDT1Q9H211 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC25.16■■□□□ 1.62
CDT1Q9H211 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CDT1Q9H211 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CDT1Q9H211 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC25.15■■□□□ 1.62
CDT1Q9H211 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CDT1Q9H211 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC25.15■■□□□ 1.62
CDT1Q9H211 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
CDT1Q9H211 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC25.15■■□□□ 1.62
CDT1Q9H211 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC25.15■■□□□ 1.62
CDT1Q9H211 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC25.15■■□□□ 1.62
CDT1Q9H211 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC25.15■■□□□ 1.62
CDT1Q9H211 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
CDT1Q9H211 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CDT1Q9H211 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
CDT1Q9H211 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CDT1Q9H211 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
CDT1Q9H211 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CDT1Q9H211 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC25.14■■□□□ 1.62
CDT1Q9H211 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC25.14■■□□□ 1.62
CDT1Q9H211 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CDT1Q9H211 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.61
CDT1Q9H211 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC25.13■■□□□ 1.61
CDT1Q9H211 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC25.13■■□□□ 1.61
CDT1Q9H211 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CDT1Q9H211 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CDT1Q9H211 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC25.13■■□□□ 1.61
CDT1Q9H211 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
CDT1Q9H211 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC25.13■■□□□ 1.61
CDT1Q9H211 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
CDT1Q9H211 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC25.12■■□□□ 1.61
CDT1Q9H211 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CDT1Q9H211 AL117332.1-201ENST00000622628 974 ntBASIC25.12■■□□□ 1.61
CDT1Q9H211 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
CDT1Q9H211 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CDT1Q9H211 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
CDT1Q9H211 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC25.12■■□□□ 1.61
CDT1Q9H211 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
CDT1Q9H211 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
CDT1Q9H211 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
CDT1Q9H211 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
CDT1Q9H211 STK32C-205ENST00000456004 607 ntTSL 2 BASIC25.11■■□□□ 1.61
CDT1Q9H211 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC25.11■■□□□ 1.61
CDT1Q9H211 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CDT1Q9H211 AL022069.1-201ENST00000568025 1636 ntBASIC25.11■■□□□ 1.61
CDT1Q9H211 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CDT1Q9H211 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC25.11■■□□□ 1.61
CDT1Q9H211 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
CDT1Q9H211 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC25.1■■□□□ 1.61
CDT1Q9H211 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC25.1■■□□□ 1.61
CDT1Q9H211 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CDT1Q9H211 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
CDT1Q9H211 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CDT1Q9H211 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CDT1Q9H211 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC25.09■■□□□ 1.61
CDT1Q9H211 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CDT1Q9H211 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC25.09■■□□□ 1.61
CDT1Q9H211 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms