Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
CDX2Q99626 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC24.76■■□□□ 1.55
CDX2Q99626 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
CDX2Q99626 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
CDX2Q99626 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
CDX2Q99626 ME3-201ENST00000323418 1068 ntTSL 5 BASIC24.75■■□□□ 1.55
CDX2Q99626 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC24.75■■□□□ 1.55
CDX2Q99626 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC24.75■■□□□ 1.55
CDX2Q99626 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC24.75■■□□□ 1.55
CDX2Q99626 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC24.75■■□□□ 1.55
CDX2Q99626 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC24.75■■□□□ 1.55
CDX2Q99626 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC24.75■■□□□ 1.55
CDX2Q99626 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
CDX2Q99626 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC24.74■■□□□ 1.55
CDX2Q99626 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
CDX2Q99626 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC24.74■■□□□ 1.55
CDX2Q99626 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC24.74■■□□□ 1.55
CDX2Q99626 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC24.73■■□□□ 1.55
CDX2Q99626 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC24.73■■□□□ 1.55
CDX2Q99626 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
CDX2Q99626 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
CDX2Q99626 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
CDX2Q99626 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
CDX2Q99626 AC027612.3-201ENST00000413684 1047 ntBASIC24.73■■□□□ 1.55
CDX2Q99626 AC090877.2-201ENST00000558441 1738 ntBASIC24.72■■□□□ 1.55
CDX2Q99626 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
CDX2Q99626 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC24.72■■□□□ 1.55
CDX2Q99626 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
CDX2Q99626 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC24.72■■□□□ 1.55
CDX2Q99626 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC24.72■■□□□ 1.55
CDX2Q99626 FOXO3B-201ENST00000395675 1928 ntBASIC24.72■■□□□ 1.55
CDX2Q99626 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
CDX2Q99626 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
CDX2Q99626 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC24.71■■□□□ 1.55
CDX2Q99626 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CDX2Q99626 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC24.71■■□□□ 1.55
CDX2Q99626 AC080038.1-201ENST00000611274 1154 ntBASIC24.71■■□□□ 1.55
CDX2Q99626 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC24.7■■□□□ 1.55
CDX2Q99626 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC24.7■■□□□ 1.55
CDX2Q99626 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC24.7■■□□□ 1.55
CDX2Q99626 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
CDX2Q99626 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
CDX2Q99626 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
CDX2Q99626 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC24.7■■□□□ 1.54
CDX2Q99626 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC24.7■■□□□ 1.54
CDX2Q99626 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC24.7■■□□□ 1.54
CDX2Q99626 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC24.7■■□□□ 1.54
CDX2Q99626 CCDC92B-201ENST00000575506 885 ntBASIC24.7■■□□□ 1.54
CDX2Q99626 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
CDX2Q99626 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CDX2Q99626 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC24.69■■□□□ 1.54
CDX2Q99626 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC24.69■■□□□ 1.54
CDX2Q99626 PROC-203ENST00000409048 1586 ntTSL 5 BASIC24.69■■□□□ 1.54
CDX2Q99626 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CDX2Q99626 AL358852.1-201ENST00000623174 1268 ntBASIC24.69■■□□□ 1.54
CDX2Q99626 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CDX2Q99626 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
CDX2Q99626 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
CDX2Q99626 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC24.68■■□□□ 1.54
CDX2Q99626 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
CDX2Q99626 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CDX2Q99626 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CDX2Q99626 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC24.68■■□□□ 1.54
CDX2Q99626 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC24.68■■□□□ 1.54
CDX2Q99626 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC24.68■■□□□ 1.54
CDX2Q99626 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC24.68■■□□□ 1.54
CDX2Q99626 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CDX2Q99626 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC24.67■■□□□ 1.54
CDX2Q99626 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
CDX2Q99626 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CDX2Q99626 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
CDX2Q99626 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC24.67■■□□□ 1.54
CDX2Q99626 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC24.67■■□□□ 1.54
CDX2Q99626 AC126544.1-201ENST00000580842 1059 ntBASIC24.67■■□□□ 1.54
CDX2Q99626 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC24.67■■□□□ 1.54
CDX2Q99626 AC104771.1-201ENST00000603335 964 ntBASIC24.67■■□□□ 1.54
CDX2Q99626 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
CDX2Q99626 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
CDX2Q99626 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CDX2Q99626 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC24.66■■□□□ 1.54
CDX2Q99626 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC24.66■■□□□ 1.54
CDX2Q99626 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC24.66■■□□□ 1.54
CDX2Q99626 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CDX2Q99626 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CDX2Q99626 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CDX2Q99626 TSPY26P-201ENST00000476365 1326 ntBASIC24.65■■□□□ 1.54
CDX2Q99626 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC24.65■■□□□ 1.54
CDX2Q99626 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC24.65■■□□□ 1.54
CDX2Q99626 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CDX2Q99626 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC24.65■■□□□ 1.54
CDX2Q99626 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC24.65■■□□□ 1.54
CDX2Q99626 RAP2CP1-201ENST00000605103 478 ntBASIC24.65■■□□□ 1.54
CDX2Q99626 MIR6084-201ENST00000622012 110 ntBASIC24.65■■□□□ 1.54
CDX2Q99626 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC24.65■■□□□ 1.54
CDX2Q99626 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CDX2Q99626 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
CDX2Q99626 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
CDX2Q99626 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC24.64■■□□□ 1.53
CDX2Q99626 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC24.64■■□□□ 1.53
CDX2Q99626 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms