Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC30.42■■■□□ 2.46
RIPK4P57078 AC135731.1-201ENST00000569415 2548 ntBASIC30.42■■■□□ 2.46
RIPK4P57078 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC30.42■■■□□ 2.46
RIPK4P57078 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
RIPK4P57078 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
RIPK4P57078 SNX5-217ENST00000606557 1087 ntBASIC30.41■■■□□ 2.46
RIPK4P57078 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC30.41■■■□□ 2.46
RIPK4P57078 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
RIPK4P57078 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
RIPK4P57078 AC131274.2-201ENST00000580697 1507 ntBASIC30.41■■■□□ 2.46
RIPK4P57078 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
RIPK4P57078 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
RIPK4P57078 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC30.4■■■□□ 2.46
RIPK4P57078 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC30.4■■■□□ 2.46
RIPK4P57078 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC30.4■■■□□ 2.46
RIPK4P57078 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC30.4■■■□□ 2.46
RIPK4P57078 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC30.39■■■□□ 2.46
RIPK4P57078 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
RIPK4P57078 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC30.39■■■□□ 2.46
RIPK4P57078 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
RIPK4P57078 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
RIPK4P57078 TMEM202-AS1-202ENST00000565181 2325 ntBASIC30.39■■■□□ 2.45
RIPK4P57078 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC30.38■■■□□ 2.45
RIPK4P57078 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC30.38■■■□□ 2.45
RIPK4P57078 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC30.38■■■□□ 2.45
RIPK4P57078 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC30.38■■■□□ 2.45
RIPK4P57078 GRAMD4P7-201ENST00000578182 1232 ntBASIC30.38■■■□□ 2.45
RIPK4P57078 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC30.38■■■□□ 2.45
RIPK4P57078 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC30.38■■■□□ 2.45
RIPK4P57078 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC30.38■■■□□ 2.45
RIPK4P57078 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC30.38■■■□□ 2.45
RIPK4P57078 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC30.37■■■□□ 2.45
RIPK4P57078 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
RIPK4P57078 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC30.37■■■□□ 2.45
RIPK4P57078 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC30.37■■■□□ 2.45
RIPK4P57078 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC30.37■■■□□ 2.45
RIPK4P57078 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
RIPK4P57078 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
RIPK4P57078 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC30.37■■■□□ 2.45
RIPK4P57078 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC30.37■■■□□ 2.45
RIPK4P57078 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
RIPK4P57078 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
RIPK4P57078 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC30.36■■■□□ 2.45
RIPK4P57078 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC30.36■■■□□ 2.45
RIPK4P57078 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
RIPK4P57078 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC30.35■■■□□ 2.45
RIPK4P57078 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC30.35■■■□□ 2.45
RIPK4P57078 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
RIPK4P57078 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC30.35■■■□□ 2.45
RIPK4P57078 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
RIPK4P57078 KRT16P3-201ENST00000439127 1283 ntBASIC30.35■■■□□ 2.45
RIPK4P57078 AC004448.1-201ENST00000458332 883 ntBASIC30.35■■■□□ 2.45
RIPK4P57078 AC010997.5-201ENST00000609182 354 ntBASIC30.35■■■□□ 2.45
RIPK4P57078 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC30.35■■■□□ 2.45
RIPK4P57078 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC30.35■■■□□ 2.45
RIPK4P57078 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC30.35■■■□□ 2.45
RIPK4P57078 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
RIPK4P57078 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC30.34■■■□□ 2.45
RIPK4P57078 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
RIPK4P57078 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC30.34■■■□□ 2.45
RIPK4P57078 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
RIPK4P57078 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
RIPK4P57078 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC30.33■■■□□ 2.45
RIPK4P57078 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC30.32■■■□□ 2.44
RIPK4P57078 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
RIPK4P57078 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC30.32■■■□□ 2.44
RIPK4P57078 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC30.32■■■□□ 2.44
RIPK4P57078 MTDHP2-201ENST00000601468 714 ntBASIC30.32■■■□□ 2.44
RIPK4P57078 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC30.32■■■□□ 2.44
RIPK4P57078 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC30.32■■■□□ 2.44
RIPK4P57078 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
RIPK4P57078 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC30.31■■■□□ 2.44
RIPK4P57078 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
RIPK4P57078 LSM4-201ENST00000252816 986 ntTSL 2 BASIC30.31■■■□□ 2.44
RIPK4P57078 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC30.31■■■□□ 2.44
RIPK4P57078 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
RIPK4P57078 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC30.31■■■□□ 2.44
RIPK4P57078 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC30.31■■■□□ 2.44
RIPK4P57078 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
RIPK4P57078 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC30.31■■■□□ 2.44
RIPK4P57078 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC30.3■■■□□ 2.44
RIPK4P57078 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC30.3■■■□□ 2.44
RIPK4P57078 LSM7-203ENST00000585409 512 ntTSL 2 BASIC30.3■■■□□ 2.44
RIPK4P57078 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC30.3■■■□□ 2.44
RIPK4P57078 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC30.3■■■□□ 2.44
RIPK4P57078 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
RIPK4P57078 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
RIPK4P57078 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
RIPK4P57078 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC30.29■■■□□ 2.44
RIPK4P57078 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
RIPK4P57078 CLTA-206ENST00000466396 695 ntTSL 2 BASIC30.29■■■□□ 2.44
RIPK4P57078 AL022069.1-201ENST00000568025 1636 ntBASIC30.29■■■□□ 2.44
RIPK4P57078 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
RIPK4P57078 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
RIPK4P57078 EED-207ENST00000528180 1745 ntTSL 5 BASIC30.28■■■□□ 2.44
RIPK4P57078 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC30.28■■■□□ 2.44
RIPK4P57078 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
RIPK4P57078 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
RIPK4P57078 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
RIPK4P57078 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC30.27■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms