Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC23.31■■□□□ 1.32
CXCL12P48061 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CXCL12P48061 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CXCL12P48061 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
CXCL12P48061 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC23.3■■□□□ 1.32
CXCL12P48061 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
CXCL12P48061 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CXCL12P48061 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC23.3■■□□□ 1.32
CXCL12P48061 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC23.3■■□□□ 1.32
CXCL12P48061 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CXCL12P48061 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
CXCL12P48061 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
CXCL12P48061 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC23.29■■□□□ 1.32
CXCL12P48061 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CXCL12P48061 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC23.29■■□□□ 1.32
CXCL12P48061 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
CXCL12P48061 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CXCL12P48061 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CXCL12P48061 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CXCL12P48061 AC099791.1-201ENST00000416440 715 ntBASIC23.28■■□□□ 1.32
CXCL12P48061 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CXCL12P48061 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC23.28■■□□□ 1.32
CXCL12P48061 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CXCL12P48061 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CXCL12P48061 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CXCL12P48061 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CXCL12P48061 JTB-203ENST00000368589 1216 ntTSL 2 BASIC23.27■■□□□ 1.32
CXCL12P48061 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CXCL12P48061 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC23.27■■□□□ 1.32
CXCL12P48061 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC23.27■■□□□ 1.32
CXCL12P48061 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CXCL12P48061 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC23.27■■□□□ 1.32
CXCL12P48061 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CXCL12P48061 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC23.27■■□□□ 1.32
CXCL12P48061 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CXCL12P48061 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC23.27■■□□□ 1.31
CXCL12P48061 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CXCL12P48061 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
CXCL12P48061 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC23.26■■□□□ 1.31
CXCL12P48061 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CXCL12P48061 RHOF-204ENST00000537265 699 ntTSL 2 BASIC23.26■■□□□ 1.31
CXCL12P48061 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC23.26■■□□□ 1.31
CXCL12P48061 AC142086.6-201ENST00000621154 1765 ntBASIC23.26■■□□□ 1.31
CXCL12P48061 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CXCL12P48061 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CXCL12P48061 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
CXCL12P48061 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CXCL12P48061 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
CXCL12P48061 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC23.25■■□□□ 1.31
CXCL12P48061 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
CXCL12P48061 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
CXCL12P48061 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CXCL12P48061 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CXCL12P48061 AC096887.2-201ENST00000623443 1957 ntBASIC23.24■■□□□ 1.31
CXCL12P48061 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CXCL12P48061 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CXCL12P48061 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CXCL12P48061 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.24■■□□□ 1.31
CXCL12P48061 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CXCL12P48061 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC23.23■■□□□ 1.31
CXCL12P48061 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
CXCL12P48061 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CXCL12P48061 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CXCL12P48061 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CXCL12P48061 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC23.23■■□□□ 1.31
CXCL12P48061 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CXCL12P48061 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
CXCL12P48061 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC23.22■■□□□ 1.31
CXCL12P48061 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CXCL12P48061 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CXCL12P48061 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CXCL12P48061 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CXCL12P48061 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CXCL12P48061 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC23.22■■□□□ 1.31
CXCL12P48061 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CXCL12P48061 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CXCL12P48061 HES6-206ENST00000409574 738 ntTSL 2 BASIC23.21■■□□□ 1.31
CXCL12P48061 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CXCL12P48061 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CXCL12P48061 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CXCL12P48061 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CXCL12P48061 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC23.2■■□□□ 1.3
CXCL12P48061 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CXCL12P48061 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC23.2■■□□□ 1.3
CXCL12P48061 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC23.2■■□□□ 1.3
CXCL12P48061 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
CXCL12P48061 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
CXCL12P48061 AC009102.2-201ENST00000606772 1639 ntBASIC23.19■■□□□ 1.3
CXCL12P48061 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
CXCL12P48061 STK32C-205ENST00000456004 607 ntTSL 2 BASIC23.19■■□□□ 1.3
CXCL12P48061 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC23.19■■□□□ 1.3
CXCL12P48061 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC23.19■■□□□ 1.3
CXCL12P48061 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
CXCL12P48061 SP2-202ENST00000613139 908 ntTSL 5 BASIC23.19■■□□□ 1.3
CXCL12P48061 AC136469.2-201ENST00000623944 1028 ntBASIC23.19■■□□□ 1.3
CXCL12P48061 AC241377.3-202ENST00000626088 1088 ntBASIC23.19■■□□□ 1.3
CXCL12P48061 AC241585.3-202ENST00000628937 1088 ntBASIC23.19■■□□□ 1.3
CXCL12P48061 AC245100.8-202ENST00000629247 1058 ntBASIC23.19■■□□□ 1.3
CXCL12P48061 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
CXCL12P48061 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC23.18■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms