Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.65■■□□□ 1.06
SOX3P41225 SSSCA1-AS1-201ENST00000567594 614 ntBASIC21.65■■□□□ 1.06
SOX3P41225 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.65■■□□□ 1.06
SOX3P41225 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SOX3P41225 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.65■■□□□ 1.06
SOX3P41225 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21.65■■□□□ 1.06
SOX3P41225 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
SOX3P41225 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
SOX3P41225 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.64■■□□□ 1.05
SOX3P41225 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SOX3P41225 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SOX3P41225 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SOX3P41225 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SOX3P41225 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
SOX3P41225 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SOX3P41225 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SOX3P41225 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
SOX3P41225 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SOX3P41225 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SOX3P41225 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SOX3P41225 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
SOX3P41225 BX664725.1-201ENST00000438252 379 ntBASIC21.63■■□□□ 1.05
SOX3P41225 Z92544.1-202ENST00000571933 1220 ntBASIC21.63■■□□□ 1.05
SOX3P41225 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SOX3P41225 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SOX3P41225 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC21.63■■□□□ 1.05
SOX3P41225 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.63■■□□□ 1.05
SOX3P41225 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.62■■□□□ 1.05
SOX3P41225 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.62■■□□□ 1.05
SOX3P41225 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SOX3P41225 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SOX3P41225 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC21.62■■□□□ 1.05
SOX3P41225 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC21.62■■□□□ 1.05
SOX3P41225 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC21.62■■□□□ 1.05
SOX3P41225 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC21.61■■□□□ 1.05
SOX3P41225 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SOX3P41225 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SOX3P41225 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SOX3P41225 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SOX3P41225 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SOX3P41225 GUSBP5-201ENST00000418136 578 ntBASIC21.61■■□□□ 1.05
SOX3P41225 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC21.61■■□□□ 1.05
SOX3P41225 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.61■■□□□ 1.05
SOX3P41225 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SOX3P41225 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SOX3P41225 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
SOX3P41225 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.6■■□□□ 1.05
SOX3P41225 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC21.6■■□□□ 1.05
SOX3P41225 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.6■■□□□ 1.05
SOX3P41225 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.6■■□□□ 1.05
SOX3P41225 KRT125P-201ENST00000546827 989 ntBASIC21.6■■□□□ 1.05
SOX3P41225 AC137630.3-201ENST00000607245 391 ntBASIC21.6■■□□□ 1.05
SOX3P41225 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
SOX3P41225 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SOX3P41225 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SOX3P41225 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SOX3P41225 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SOX3P41225 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
SOX3P41225 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SOX3P41225 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.59■■□□□ 1.05
SOX3P41225 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.59■■□□□ 1.05
SOX3P41225 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC21.59■■□□□ 1.05
SOX3P41225 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.59■■□□□ 1.05
SOX3P41225 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.59■■□□□ 1.05
SOX3P41225 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SOX3P41225 AC090877.2-201ENST00000558441 1738 ntBASIC21.58■■□□□ 1.05
SOX3P41225 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
SOX3P41225 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.58■■□□□ 1.05
SOX3P41225 SLC6A10P-202ENST00000431994 2058 ntBASIC21.58■■□□□ 1.05
SOX3P41225 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
SOX3P41225 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
SOX3P41225 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SOX3P41225 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
SOX3P41225 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.57■■□□□ 1.04
SOX3P41225 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
SOX3P41225 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SOX3P41225 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.57■■□□□ 1.04
SOX3P41225 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SOX3P41225 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SOX3P41225 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC21.56■■□□□ 1.04
SOX3P41225 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.56■■□□□ 1.04
SOX3P41225 MIR4787-201ENST00000607364 84 ntBASIC21.56■■□□□ 1.04
SOX3P41225 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SOX3P41225 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SOX3P41225 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.56■■□□□ 1.04
SOX3P41225 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SOX3P41225 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SOX3P41225 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.55■■□□□ 1.04
SOX3P41225 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
SOX3P41225 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SOX3P41225 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
SOX3P41225 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SOX3P41225 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
SOX3P41225 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SOX3P41225 AC021242.3-201ENST00000607598 1377 ntBASIC21.54■■□□□ 1.04
SOX3P41225 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.54■■□□□ 1.04
SOX3P41225 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.54■■□□□ 1.04
SOX3P41225 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC21.54■■□□□ 1.04
SOX3P41225 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
SOX3P41225 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms