Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 DUX4L8-201ENST00000629013 1275 ntBASIC20.28■□□□□ 0.84
COL8A1P27658 DUX4L3-201ENST00000630187 1275 ntBASIC20.28■□□□□ 0.84
COL8A1P27658 DUX4L7-201ENST00000630678 1275 ntBASIC20.28■□□□□ 0.84
COL8A1P27658 DUX4L5-201ENST00000630834 1275 ntBASIC20.28■□□□□ 0.84
COL8A1P27658 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.28■□□□□ 0.84
COL8A1P27658 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.28■□□□□ 0.84
COL8A1P27658 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL8A1P27658 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL8A1P27658 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL8A1P27658 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC20.27■□□□□ 0.84
COL8A1P27658 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
COL8A1P27658 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL8A1P27658 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
COL8A1P27658 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL8A1P27658 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL8A1P27658 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL8A1P27658 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.27■□□□□ 0.84
COL8A1P27658 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL8A1P27658 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL8A1P27658 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
COL8A1P27658 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL8A1P27658 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL8A1P27658 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL8A1P27658 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL8A1P27658 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.26■□□□□ 0.83
COL8A1P27658 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.26■□□□□ 0.83
COL8A1P27658 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.26■□□□□ 0.83
COL8A1P27658 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL8A1P27658 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL8A1P27658 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL8A1P27658 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC20.26■□□□□ 0.83
COL8A1P27658 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL8A1P27658 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL8A1P27658 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL8A1P27658 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC20.25■□□□□ 0.83
COL8A1P27658 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL8A1P27658 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL8A1P27658 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL8A1P27658 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.25■□□□□ 0.83
COL8A1P27658 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.25■□□□□ 0.83
COL8A1P27658 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC20.25■□□□□ 0.83
COL8A1P27658 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL8A1P27658 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
COL8A1P27658 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.25■□□□□ 0.83
COL8A1P27658 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL8A1P27658 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL8A1P27658 FOXO3B-201ENST00000395675 1928 ntBASIC20.24■□□□□ 0.83
COL8A1P27658 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL8A1P27658 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
COL8A1P27658 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.24■□□□□ 0.83
COL8A1P27658 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
COL8A1P27658 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.24■□□□□ 0.83
COL8A1P27658 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
COL8A1P27658 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.24■□□□□ 0.83
COL8A1P27658 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.24■□□□□ 0.83
COL8A1P27658 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL8A1P27658 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL8A1P27658 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL8A1P27658 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
COL8A1P27658 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL8A1P27658 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL8A1P27658 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.23■□□□□ 0.83
COL8A1P27658 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.23■□□□□ 0.83
COL8A1P27658 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL8A1P27658 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.23■□□□□ 0.83
COL8A1P27658 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.23■□□□□ 0.83
COL8A1P27658 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
COL8A1P27658 AC011298.3-201ENST00000615796 283 ntBASIC20.23■□□□□ 0.83
COL8A1P27658 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL8A1P27658 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL8A1P27658 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC20.22■□□□□ 0.83
COL8A1P27658 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
COL8A1P27658 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL8A1P27658 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL8A1P27658 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL8A1P27658 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL8A1P27658 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.22■□□□□ 0.83
COL8A1P27658 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.22■□□□□ 0.83
COL8A1P27658 AC142472.1-201ENST00000612013 1741 ntBASIC20.22■□□□□ 0.83
COL8A1P27658 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL8A1P27658 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
COL8A1P27658 DRD5P2-201ENST00000421395 2012 ntBASIC20.21■□□□□ 0.83
COL8A1P27658 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL8A1P27658 YBX1P1-201ENST00000445822 960 ntBASIC20.21■□□□□ 0.83
COL8A1P27658 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.21■□□□□ 0.83
COL8A1P27658 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL8A1P27658 AC005703.6-201ENST00000623265 1329 ntBASIC20.21■□□□□ 0.83
COL8A1P27658 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL8A1P27658 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC20.21■□□□□ 0.83
COL8A1P27658 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL8A1P27658 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL8A1P27658 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL8A1P27658 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL8A1P27658 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL8A1P27658 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.2■□□□□ 0.82
COL8A1P27658 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL8A1P27658 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.2■□□□□ 0.82
COL8A1P27658 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
COL8A1P27658 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL8A1P27658 AC090877.2-201ENST00000558441 1738 ntBASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms