Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC020928.2-201ENST00000588717 2197 ntBASIC24.47■■□□□ 1.51
BDNFP23560 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC24.47■■□□□ 1.51
BDNFP23560 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
BDNFP23560 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
BDNFP23560 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC24.46■■□□□ 1.51
BDNFP23560 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
BDNFP23560 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC24.46■■□□□ 1.51
BDNFP23560 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC24.46■■□□□ 1.51
BDNFP23560 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
BDNFP23560 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
BDNFP23560 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC24.46■■□□□ 1.51
BDNFP23560 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC24.46■■□□□ 1.51
BDNFP23560 MIR6724-1-201ENST00000616420 92 ntBASIC24.46■■□□□ 1.51
BDNFP23560 MIR6724-2-201ENST00000616483 92 ntBASIC24.46■■□□□ 1.51
BDNFP23560 MIR6724-4-201ENST00000617390 92 ntBASIC24.46■■□□□ 1.51
BDNFP23560 MIR6724-3-201ENST00000622482 92 ntBASIC24.46■■□□□ 1.51
BDNFP23560 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
BDNFP23560 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
BDNFP23560 LSM7-203ENST00000585409 512 ntTSL 2 BASIC24.45■■□□□ 1.5
BDNFP23560 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC24.45■■□□□ 1.5
BDNFP23560 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
BDNFP23560 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
BDNFP23560 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
BDNFP23560 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC24.44■■□□□ 1.5
BDNFP23560 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
BDNFP23560 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
BDNFP23560 CD72-202ENST00000378430 585 ntTSL 3 BASIC24.44■■□□□ 1.5
BDNFP23560 AC004448.1-201ENST00000458332 883 ntBASIC24.44■■□□□ 1.5
BDNFP23560 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC24.44■■□□□ 1.5
BDNFP23560 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
BDNFP23560 AC131274.2-201ENST00000580697 1507 ntBASIC24.44■■□□□ 1.5
BDNFP23560 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
BDNFP23560 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC24.43■■□□□ 1.5
BDNFP23560 CLTA-206ENST00000466396 695 ntTSL 2 BASIC24.43■■□□□ 1.5
BDNFP23560 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC24.43■■□□□ 1.5
BDNFP23560 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC24.43■■□□□ 1.5
BDNFP23560 HLA-L-211ENST00000482052 1765 ntBASIC24.43■■□□□ 1.5
BDNFP23560 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC24.43■■□□□ 1.5
BDNFP23560 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC24.43■■□□□ 1.5
BDNFP23560 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC24.42■■□□□ 1.5
BDNFP23560 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC24.42■■□□□ 1.5
BDNFP23560 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
BDNFP23560 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
BDNFP23560 MIR6722-201ENST00000617286 78 ntBASIC24.42■■□□□ 1.5
BDNFP23560 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC24.42■■□□□ 1.5
BDNFP23560 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
BDNFP23560 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
BDNFP23560 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
BDNFP23560 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC24.42■■□□□ 1.5
BDNFP23560 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
BDNFP23560 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC24.42■■□□□ 1.5
BDNFP23560 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
BDNFP23560 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
BDNFP23560 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
BDNFP23560 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
BDNFP23560 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
BDNFP23560 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
BDNFP23560 AL117332.1-201ENST00000622628 974 ntBASIC24.41■■□□□ 1.5
BDNFP23560 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
BDNFP23560 AC138932.3-201ENST00000567634 1902 ntBASIC24.4■■□□□ 1.5
BDNFP23560 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
BDNFP23560 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC24.4■■□□□ 1.5
BDNFP23560 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
BDNFP23560 MED17-227ENST00000640521 2047 ntTSL 5 BASIC24.4■■□□□ 1.5
BDNFP23560 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
BDNFP23560 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.5
BDNFP23560 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
BDNFP23560 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC24.39■■□□□ 1.5
BDNFP23560 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
BDNFP23560 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC24.39■■□□□ 1.49
BDNFP23560 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC24.39■■□□□ 1.49
BDNFP23560 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
BDNFP23560 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
BDNFP23560 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC24.39■■□□□ 1.49
BDNFP23560 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
BDNFP23560 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC24.38■■□□□ 1.49
BDNFP23560 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC24.38■■□□□ 1.49
BDNFP23560 AC142381.3-201ENST00000568208 1670 ntBASIC24.38■■□□□ 1.49
BDNFP23560 AP003733.4-201ENST00000623785 1697 ntBASIC24.38■■□□□ 1.49
BDNFP23560 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
BDNFP23560 TRIR-202ENST00000588213 841 ntTSL 3 BASIC24.38■■□□□ 1.49
BDNFP23560 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
BDNFP23560 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC24.38■■□□□ 1.49
BDNFP23560 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
BDNFP23560 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC24.37■■□□□ 1.49
BDNFP23560 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
BDNFP23560 TFPT-201ENST00000391757 774 ntTSL 5 BASIC24.37■■□□□ 1.49
BDNFP23560 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
BDNFP23560 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC24.37■■□□□ 1.49
BDNFP23560 SRR-208ENST00000576848 588 ntTSL 4 BASIC24.37■■□□□ 1.49
BDNFP23560 MIR3621-201ENST00000580529 85 ntBASIC24.37■■□□□ 1.49
BDNFP23560 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
BDNFP23560 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC24.37■■□□□ 1.49
BDNFP23560 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
BDNFP23560 AL022069.1-201ENST00000568025 1636 ntBASIC24.36■■□□□ 1.49
BDNFP23560 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC24.36■■□□□ 1.49
BDNFP23560 STK32C-205ENST00000456004 607 ntTSL 2 BASIC24.36■■□□□ 1.49
BDNFP23560 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC24.36■■□□□ 1.49
BDNFP23560 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC24.36■■□□□ 1.49
BDNFP23560 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC24.36■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms