Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
CACNA1FO60840 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC29.49■■■□□ 2.31
CACNA1FO60840 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
CACNA1FO60840 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC29.49■■■□□ 2.31
CACNA1FO60840 MIR6724-1-201ENST00000616420 92 ntBASIC29.49■■■□□ 2.31
CACNA1FO60840 MIR6724-2-201ENST00000616483 92 ntBASIC29.49■■■□□ 2.31
CACNA1FO60840 MIR6724-4-201ENST00000617390 92 ntBASIC29.49■■■□□ 2.31
CACNA1FO60840 MIR6724-3-201ENST00000622482 92 ntBASIC29.49■■■□□ 2.31
CACNA1FO60840 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC29.49■■■□□ 2.31
CACNA1FO60840 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC29.49■■■□□ 2.31
CACNA1FO60840 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC29.49■■■□□ 2.31
CACNA1FO60840 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC29.49■■■□□ 2.31
CACNA1FO60840 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC29.48■■■□□ 2.31
CACNA1FO60840 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
CACNA1FO60840 STK32C-205ENST00000456004 607 ntTSL 2 BASIC29.48■■■□□ 2.31
CACNA1FO60840 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC29.48■■■□□ 2.31
CACNA1FO60840 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
CACNA1FO60840 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC29.48■■■□□ 2.31
CACNA1FO60840 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC29.48■■■□□ 2.31
CACNA1FO60840 LSM7-203ENST00000585409 512 ntTSL 2 BASIC29.48■■■□□ 2.31
CACNA1FO60840 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
CACNA1FO60840 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC29.47■■■□□ 2.31
CACNA1FO60840 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC29.47■■■□□ 2.31
CACNA1FO60840 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
CACNA1FO60840 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
CACNA1FO60840 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC29.46■■■□□ 2.31
CACNA1FO60840 CLTA-206ENST00000466396 695 ntTSL 2 BASIC29.46■■■□□ 2.31
CACNA1FO60840 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
CACNA1FO60840 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC29.46■■■□□ 2.31
CACNA1FO60840 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC29.46■■■□□ 2.31
CACNA1FO60840 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC29.46■■■□□ 2.31
CACNA1FO60840 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
CACNA1FO60840 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
CACNA1FO60840 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC29.46■■■□□ 2.31
CACNA1FO60840 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC29.46■■■□□ 2.31
CACNA1FO60840 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
CACNA1FO60840 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
CACNA1FO60840 TFPT-201ENST00000391757 774 ntTSL 5 BASIC29.45■■■□□ 2.31
CACNA1FO60840 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC29.45■■■□□ 2.31
CACNA1FO60840 AC004448.1-201ENST00000458332 883 ntBASIC29.45■■■□□ 2.31
CACNA1FO60840 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC29.45■■■□□ 2.31
CACNA1FO60840 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC29.45■■■□□ 2.3
CACNA1FO60840 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC29.45■■■□□ 2.3
CACNA1FO60840 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC29.44■■■□□ 2.3
CACNA1FO60840 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC29.44■■■□□ 2.3
CACNA1FO60840 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC29.44■■■□□ 2.3
CACNA1FO60840 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
CACNA1FO60840 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
CACNA1FO60840 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
CACNA1FO60840 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
CACNA1FO60840 AC131281.2-201ENST00000520478 145 ntBASIC29.44■■■□□ 2.3
CACNA1FO60840 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC29.44■■■□□ 2.3
CACNA1FO60840 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
CACNA1FO60840 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC29.44■■■□□ 2.3
CACNA1FO60840 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC29.43■■■□□ 2.3
CACNA1FO60840 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
CACNA1FO60840 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC29.43■■■□□ 2.3
CACNA1FO60840 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
CACNA1FO60840 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC29.43■■■□□ 2.3
CACNA1FO60840 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC29.43■■■□□ 2.3
CACNA1FO60840 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC29.43■■■□□ 2.3
CACNA1FO60840 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
CACNA1FO60840 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
CACNA1FO60840 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
CACNA1FO60840 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
CACNA1FO60840 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC29.43■■■□□ 2.3
CACNA1FO60840 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC29.43■■■□□ 2.3
CACNA1FO60840 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC29.43■■■□□ 2.3
CACNA1FO60840 CLTA-210ENST00000540080 989 ntTSL 2 BASIC29.43■■■□□ 2.3
CACNA1FO60840 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC29.42■■■□□ 2.3
CACNA1FO60840 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
CACNA1FO60840 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC29.42■■■□□ 2.3
CACNA1FO60840 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
CACNA1FO60840 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC29.41■■■□□ 2.3
CACNA1FO60840 HLA-L-211ENST00000482052 1765 ntBASIC29.41■■■□□ 2.3
CACNA1FO60840 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
CACNA1FO60840 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC29.41■■■□□ 2.3
CACNA1FO60840 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC29.41■■■□□ 2.3
CACNA1FO60840 AC010997.5-201ENST00000609182 354 ntBASIC29.41■■■□□ 2.3
CACNA1FO60840 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
CACNA1FO60840 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
CACNA1FO60840 AL356441.2-201ENST00000443009 864 ntBASIC29.4■■■□□ 2.3
CACNA1FO60840 AC131212.1-201ENST00000613771 668 ntBASIC29.4■■■□□ 2.3
CACNA1FO60840 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC29.4■■■□□ 2.3
CACNA1FO60840 AC141586.4-201ENST00000624558 1573 ntBASIC29.4■■■□□ 2.3
CACNA1FO60840 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC29.39■■■□□ 2.3
CACNA1FO60840 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
CACNA1FO60840 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC29.39■■■□□ 2.3
CACNA1FO60840 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.29
CACNA1FO60840 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC29.39■■■□□ 2.29
CACNA1FO60840 LINC00543-201ENST00000567234 1845 ntBASIC29.38■■■□□ 2.29
CACNA1FO60840 AL022069.1-201ENST00000568025 1636 ntBASIC29.38■■■□□ 2.29
CACNA1FO60840 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC29.38■■■□□ 2.29
CACNA1FO60840 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC29.38■■■□□ 2.29
CACNA1FO60840 LSM4-201ENST00000252816 986 ntTSL 2 BASIC29.37■■■□□ 2.29
CACNA1FO60840 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC29.37■■■□□ 2.29
CACNA1FO60840 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
CACNA1FO60840 QDPR-206ENST00000508623 601 ntTSL 3 BASIC29.37■■■□□ 2.29
CACNA1FO60840 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
CACNA1FO60840 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC29.36■■■□□ 2.29
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms