Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC26.32■■□□□ 1.8
CCDC85CA6NKD9 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC26.32■■□□□ 1.8
CCDC85CA6NKD9 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
CCDC85CA6NKD9 ABCB10P3-201ENST00000561950 2166 ntBASIC26.31■■□□□ 1.8
CCDC85CA6NKD9 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
CCDC85CA6NKD9 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
CCDC85CA6NKD9 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CCDC85CA6NKD9 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CCDC85CA6NKD9 APTR-205ENST00000447009 902 ntTSL 2 BASIC26.31■■□□□ 1.8
CCDC85CA6NKD9 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC26.31■■□□□ 1.8
CCDC85CA6NKD9 TSPY26P-201ENST00000476365 1326 ntBASIC26.31■■□□□ 1.8
CCDC85CA6NKD9 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC85CA6NKD9 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC85CA6NKD9 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC85CA6NKD9 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC26.3■■□□□ 1.8
CCDC85CA6NKD9 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC26.3■■□□□ 1.8
CCDC85CA6NKD9 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC26.3■■□□□ 1.8
CCDC85CA6NKD9 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC26.3■■□□□ 1.8
CCDC85CA6NKD9 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC85CA6NKD9 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC26.3■■□□□ 1.8
CCDC85CA6NKD9 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC26.3■■□□□ 1.8
CCDC85CA6NKD9 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
CCDC85CA6NKD9 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC26.3■■□□□ 1.8
CCDC85CA6NKD9 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC85CA6NKD9 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC85CA6NKD9 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC26.29■■□□□ 1.8
CCDC85CA6NKD9 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC85CA6NKD9 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC26.29■■□□□ 1.8
CCDC85CA6NKD9 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC26.29■■□□□ 1.8
CCDC85CA6NKD9 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC26.29■■□□□ 1.8
CCDC85CA6NKD9 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC85CA6NKD9 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC26.28■■□□□ 1.8
CCDC85CA6NKD9 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC85CA6NKD9 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC85CA6NKD9 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC85CA6NKD9 AC016769.1-201ENST00000409132 1010 ntBASIC26.28■■□□□ 1.8
CCDC85CA6NKD9 AC005703.6-201ENST00000623265 1329 ntBASIC26.28■■□□□ 1.8
CCDC85CA6NKD9 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC26.28■■□□□ 1.8
CCDC85CA6NKD9 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC85CA6NKD9 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC26.27■■□□□ 1.8
CCDC85CA6NKD9 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC85CA6NKD9 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC85CA6NKD9 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC26.26■■□□□ 1.79
CCDC85CA6NKD9 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC85CA6NKD9 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC26.26■■□□□ 1.79
CCDC85CA6NKD9 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC85CA6NKD9 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC85CA6NKD9 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC85CA6NKD9 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC85CA6NKD9 NT5C3AP1-201ENST00000394500 1012 ntBASIC26.26■■□□□ 1.79
CCDC85CA6NKD9 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC26.26■■□□□ 1.79
CCDC85CA6NKD9 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC26.25■■□□□ 1.79
CCDC85CA6NKD9 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
CCDC85CA6NKD9 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CCDC85CA6NKD9 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC26.25■■□□□ 1.79
CCDC85CA6NKD9 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CCDC85CA6NKD9 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC26.24■■□□□ 1.79
CCDC85CA6NKD9 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.79
CCDC85CA6NKD9 AC006015.1-201ENST00000429970 570 ntBASIC26.24■■□□□ 1.79
CCDC85CA6NKD9 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CCDC85CA6NKD9 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
CCDC85CA6NKD9 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
CCDC85CA6NKD9 FAM201B-201ENST00000458407 597 ntBASIC26.23■■□□□ 1.79
CCDC85CA6NKD9 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
CCDC85CA6NKD9 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CCDC85CA6NKD9 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
CCDC85CA6NKD9 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
CCDC85CA6NKD9 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC26.22■■□□□ 1.79
CCDC85CA6NKD9 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
CCDC85CA6NKD9 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
CCDC85CA6NKD9 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
CCDC85CA6NKD9 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CCDC85CA6NKD9 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
CCDC85CA6NKD9 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC26.21■■□□□ 1.79
CCDC85CA6NKD9 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC26.21■■□□□ 1.79
CCDC85CA6NKD9 NCF1B-203ENST00000435988 1254 ntBASIC26.21■■□□□ 1.79
CCDC85CA6NKD9 CROCCP5-201ENST00000436658 830 ntBASIC26.21■■□□□ 1.79
CCDC85CA6NKD9 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC26.21■■□□□ 1.79
CCDC85CA6NKD9 AC241377.3-202ENST00000626088 1088 ntBASIC26.21■■□□□ 1.79
CCDC85CA6NKD9 AC241585.3-202ENST00000628937 1088 ntBASIC26.21■■□□□ 1.79
CCDC85CA6NKD9 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
CCDC85CA6NKD9 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.78
CCDC85CA6NKD9 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.78
CCDC85CA6NKD9 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC26.2■■□□□ 1.78
CCDC85CA6NKD9 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
CCDC85CA6NKD9 WT1-AS_3.1-201ENST00000613262 234 ntBASIC26.2■■□□□ 1.78
CCDC85CA6NKD9 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC26.2■■□□□ 1.78
CCDC85CA6NKD9 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC26.19■■□□□ 1.78
CCDC85CA6NKD9 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
CCDC85CA6NKD9 KRT18P6-201ENST00000555540 1265 ntBASIC26.19■■□□□ 1.78
CCDC85CA6NKD9 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC26.19■■□□□ 1.78
CCDC85CA6NKD9 AC137761.2-201ENST00000561729 223 ntBASIC26.19■■□□□ 1.78
CCDC85CA6NKD9 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC26.19■■□□□ 1.78
CCDC85CA6NKD9 AC145350.3-201ENST00000569033 163 ntBASIC26.19■■□□□ 1.78
CCDC85CA6NKD9 AC008687.6-201ENST00000596318 630 ntBASIC26.19■■□□□ 1.78
CCDC85CA6NKD9 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC26.19■■□□□ 1.78
CCDC85CA6NKD9 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC26.19■■□□□ 1.78
CCDC85CA6NKD9 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC26.19■■□□□ 1.78
CCDC85CA6NKD9 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CCDC85CA6NKD9 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC26.18■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms