Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 AC021242.3-201ENST00000607598 1377 ntBASIC18.18■□□□□ 0.5
TRAV41A0A0B4J266 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV41A0A0B4J266 LBH-205ENST00000407930 756 ntTSL 2 BASIC18.18■□□□□ 0.5
TRAV41A0A0B4J266 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC18.18■□□□□ 0.5
TRAV41A0A0B4J266 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC18.18■□□□□ 0.5
TRAV41A0A0B4J266 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV41A0A0B4J266 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV41A0A0B4J266 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV41A0A0B4J266 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV41A0A0B4J266 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV41A0A0B4J266 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
TRAV41A0A0B4J266 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV41A0A0B4J266 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV41A0A0B4J266 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC18.17■□□□□ 0.5
TRAV41A0A0B4J266 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV41A0A0B4J266 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV41A0A0B4J266 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV41A0A0B4J266 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV41A0A0B4J266 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV41A0A0B4J266 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC18.16■□□□□ 0.5
TRAV41A0A0B4J266 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC18.16■□□□□ 0.5
TRAV41A0A0B4J266 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC18.16■□□□□ 0.5
TRAV41A0A0B4J266 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV41A0A0B4J266 TK2-202ENST00000417693 1046 ntTSL 2 BASIC18.16■□□□□ 0.5
TRAV41A0A0B4J266 STK32C-205ENST00000456004 607 ntTSL 2 BASIC18.16■□□□□ 0.5
TRAV41A0A0B4J266 TRIR-205ENST00000592273 783 ntTSL 3 BASIC18.16■□□□□ 0.5
TRAV41A0A0B4J266 MIR4787-201ENST00000607364 84 ntBASIC18.16■□□□□ 0.5
TRAV41A0A0B4J266 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV41A0A0B4J266 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
TRAV41A0A0B4J266 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV41A0A0B4J266 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC18.16■□□□□ 0.5
TRAV41A0A0B4J266 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV41A0A0B4J266 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV41A0A0B4J266 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC18.15■□□□□ 0.5
TRAV41A0A0B4J266 HES6-204ENST00000409182 863 ntTSL 2 BASIC18.15■□□□□ 0.5
TRAV41A0A0B4J266 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV41A0A0B4J266 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC18.15■□□□□ 0.5
TRAV41A0A0B4J266 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV41A0A0B4J266 AL022069.1-201ENST00000568025 1636 ntBASIC18.15■□□□□ 0.5
TRAV41A0A0B4J266 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV41A0A0B4J266 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
TRAV41A0A0B4J266 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC18.14■□□□□ 0.49
TRAV41A0A0B4J266 AL139125.2-201ENST00000623134 1869 ntBASIC18.14■□□□□ 0.49
TRAV41A0A0B4J266 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC18.14■□□□□ 0.49
TRAV41A0A0B4J266 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV41A0A0B4J266 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
TRAV41A0A0B4J266 LSM7-203ENST00000585409 512 ntTSL 2 BASIC18.14■□□□□ 0.49
TRAV41A0A0B4J266 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
TRAV41A0A0B4J266 AC135731.1-201ENST00000569415 2548 ntBASIC18.14■□□□□ 0.49
TRAV41A0A0B4J266 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV41A0A0B4J266 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV41A0A0B4J266 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV41A0A0B4J266 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV41A0A0B4J266 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV41A0A0B4J266 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC18.13■□□□□ 0.49
TRAV41A0A0B4J266 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC18.13■□□□□ 0.49
TRAV41A0A0B4J266 OR2A1-AS1-204ENST00000470435 602 ntBASIC18.13■□□□□ 0.49
TRAV41A0A0B4J266 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV41A0A0B4J266 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV41A0A0B4J266 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
TRAV41A0A0B4J266 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV41A0A0B4J266 TMEM202-AS1-202ENST00000565181 2325 ntBASIC18.12■□□□□ 0.49
TRAV41A0A0B4J266 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC18.12■□□□□ 0.49
TRAV41A0A0B4J266 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC18.12■□□□□ 0.49
TRAV41A0A0B4J266 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC18.12■□□□□ 0.49
TRAV41A0A0B4J266 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV41A0A0B4J266 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
TRAV41A0A0B4J266 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC18.12■□□□□ 0.49
TRAV41A0A0B4J266 LINC01124-201ENST00000409786 2117 ntBASIC18.12■□□□□ 0.49
TRAV41A0A0B4J266 SENP5-202ENST00000419026 973 ntTSL 3 BASIC18.12■□□□□ 0.49
TRAV41A0A0B4J266 AL161729.1-201ENST00000604104 1402 ntBASIC18.12■□□□□ 0.49
TRAV41A0A0B4J266 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV41A0A0B4J266 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
TRAV41A0A0B4J266 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV41A0A0B4J266 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC18.11■□□□□ 0.49
TRAV41A0A0B4J266 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV41A0A0B4J266 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC18.11■□□□□ 0.49
TRAV41A0A0B4J266 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC18.11■□□□□ 0.49
TRAV41A0A0B4J266 AC092028.1-203ENST00000608262 953 ntBASIC18.11■□□□□ 0.49
TRAV41A0A0B4J266 AC131274.2-201ENST00000580697 1507 ntBASIC18.11■□□□□ 0.49
TRAV41A0A0B4J266 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC18.11■□□□□ 0.49
TRAV41A0A0B4J266 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV41A0A0B4J266 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
TRAV41A0A0B4J266 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV41A0A0B4J266 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV41A0A0B4J266 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV41A0A0B4J266 AC141586.4-201ENST00000624558 1573 ntBASIC18.1■□□□□ 0.49
TRAV41A0A0B4J266 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC18.1■□□□□ 0.49
TRAV41A0A0B4J266 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC18.1■□□□□ 0.49
TRAV41A0A0B4J266 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC18.1■□□□□ 0.49
TRAV41A0A0B4J266 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV41A0A0B4J266 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC18.1■□□□□ 0.49
TRAV41A0A0B4J266 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV41A0A0B4J266 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV41A0A0B4J266 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC18.1■□□□□ 0.49
TRAV41A0A0B4J266 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV41A0A0B4J266 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
TRAV41A0A0B4J266 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
TRAV41A0A0B4J266 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
TRAV41A0A0B4J266 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms