Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 API5-202ENST00000420461 2009 ntTSL 2 BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 AC119751.2-201ENST00000504529 210 ntBASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 RPS15-202ENST00000585665 467 ntTSL 3 BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC19.47■□□□□ 0.71
CHMP4AQ9BY43 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 ANKRD19P-201ENST00000338192 862 ntBASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 FAM197Y7-201ENST00000432892 766 ntBASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 SNX29P1-201ENST00000548357 1007 ntBASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 WNT11-204ENST00000621122 789 ntTSL 5 BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4AQ9BY43 BID-213ENST00000615414 2236 ntTSL 5 BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 AC055811.4-201ENST00000624039 1754 ntBASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 AC136621.1-201ENST00000624017 2304 ntBASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 ANKRD30BP2-201ENST00000435744 1610 ntBASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 APOC3-202ENST00000375345 604 ntTSL 5 BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms