Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 AC004066.1-201ENST00000502488 802 ntBASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 TDH-203ENST00000531764 1110 ntBASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 IFT20-206ENST00000578122 834 ntTSL 2 BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 IFT20-208ENST00000578985 831 ntTSL 3 BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 METTL26-214ENST00000614890 801 ntTSL 3 BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
PTCHD1Q96NR3 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 MGST3-203ENST00000367885 680 ntTSL 2 BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 ACTG1P3-201ENST00000431775 1114 ntBASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 AP001063.1-201ENST00000568332 529 ntBASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 BX539320.1-201ENST00000623759 877 ntBASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 AC005252.2-201ENST00000624630 1141 ntBASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 CICP11-201ENST00000434745 2827 ntBASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 AL109954.1-202ENST00000564051 2148 ntBASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC14.47□□□□□ -0.09
PTCHD1Q96NR3 AC103702.1-201ENST00000548801 2630 ntBASIC14.46□□□□□ -0.09
PTCHD1Q96NR3 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms