Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 AC018442.1-201ENST00000421439 2061 ntBASIC13.83□□□□□ -0.2
PTP4A1Q93096 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
PTP4A1Q93096 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC13.82□□□□□ -0.2
PTP4A1Q93096 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
PTP4A1Q93096 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC13.82□□□□□ -0.2
PTP4A1Q93096 GRAMD4P3-201ENST00000621665 1669 ntBASIC13.82□□□□□ -0.2
PTP4A1Q93096 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PTP4A1Q93096 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
PTP4A1Q93096 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
PTP4A1Q93096 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
PTP4A1Q93096 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PTP4A1Q93096 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
PTP4A1Q93096 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
PTP4A1Q93096 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
PTP4A1Q93096 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PTP4A1Q93096 AL139400.1-201ENST00000366220 510 ntBASIC13.82□□□□□ -0.2
PTP4A1Q93096 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PTP4A1Q93096 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC13.82□□□□□ -0.2
PTP4A1Q93096 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC13.82□□□□□ -0.2
PTP4A1Q93096 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PTP4A1Q93096 AC025181.2-201ENST00000606994 802 ntBASIC13.82□□□□□ -0.2
PTP4A1Q93096 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC13.82□□□□□ -0.2
PTP4A1Q93096 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
PTP4A1Q93096 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
PTP4A1Q93096 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PTP4A1Q93096 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
PTP4A1Q93096 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC13.82□□□□□ -0.2
PTP4A1Q93096 KRT18P28-201ENST00000453838 1332 ntBASIC13.82□□□□□ -0.2
PTP4A1Q93096 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC13.82□□□□□ -0.2
PTP4A1Q93096 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PTP4A1Q93096 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
PTP4A1Q93096 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
PTP4A1Q93096 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PTP4A1Q93096 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PTP4A1Q93096 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC13.82□□□□□ -0.2
PTP4A1Q93096 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PTP4A1Q93096 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PTP4A1Q93096 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC13.81□□□□□ -0.2
PTP4A1Q93096 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 SF1-209ENST00000433274 2317 ntTSL 2 BASIC13.81□□□□□ -0.2
PTP4A1Q93096 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC13.81□□□□□ -0.2
PTP4A1Q93096 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC13.81□□□□□ -0.2
PTP4A1Q93096 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 LBH-203ENST00000404397 543 ntTSL 4 BASIC13.81□□□□□ -0.2
PTP4A1Q93096 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC13.81□□□□□ -0.2
PTP4A1Q93096 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC13.81□□□□□ -0.2
PTP4A1Q93096 CNN2P2-201ENST00000443536 909 ntBASIC13.81□□□□□ -0.2
PTP4A1Q93096 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC13.81□□□□□ -0.2
PTP4A1Q93096 CNN2P3-201ENST00000450201 906 ntBASIC13.81□□□□□ -0.2
PTP4A1Q93096 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC13.81□□□□□ -0.2
PTP4A1Q93096 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC13.81□□□□□ -0.2
PTP4A1Q93096 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC13.81□□□□□ -0.2
PTP4A1Q93096 VPS29-207ENST00000549970 818 ntTSL 3 BASIC13.81□□□□□ -0.2
PTP4A1Q93096 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC13.81□□□□□ -0.2
PTP4A1Q93096 AC025048.3-201ENST00000590609 569 ntBASIC13.81□□□□□ -0.2
PTP4A1Q93096 COQ4-205ENST00000609948 956 ntTSL 2 BASIC13.81□□□□□ -0.2
PTP4A1Q93096 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC13.81□□□□□ -0.2
PTP4A1Q93096 AC005702.4-201ENST00000618393 416 ntBASIC13.81□□□□□ -0.2
PTP4A1Q93096 AL136317.3-201ENST00000618497 906 ntBASIC13.81□□□□□ -0.2
PTP4A1Q93096 AL033527.5-202ENST00000641632 1098 ntBASIC13.81□□□□□ -0.2
PTP4A1Q93096 AC113367.3-201ENST00000508316 1912 ntBASIC13.81□□□□□ -0.2
PTP4A1Q93096 BX640514.1-201ENST00000583223 1918 ntBASIC13.81□□□□□ -0.2
PTP4A1Q93096 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
PTP4A1Q93096 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC13.81□□□□□ -0.2
PTP4A1Q93096 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 TUBB3P1-201ENST00000405796 1332 ntBASIC13.81□□□□□ -0.2
PTP4A1Q93096 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC13.81□□□□□ -0.2
PTP4A1Q93096 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC13.81□□□□□ -0.2
PTP4A1Q93096 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
PTP4A1Q93096 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PTP4A1Q93096 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC13.81□□□□□ -0.2
PTP4A1Q93096 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PTP4A1Q93096 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PTP4A1Q93096 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms