Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 FAM86B3P-203ENST00000523992 854 ntBASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 POLD4-208ENST00000532830 904 ntTSL 3 BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 E2F3P2-201ENST00000447755 1422 ntBASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 AP000593.2-201ENST00000542775 1433 ntBASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 FRMPD2B-201ENST00000431305 1347 ntBASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 FAM90A7P-201ENST00000382628 1395 ntBASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 FAM90A23P-201ENST00000400136 1395 ntBASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC17.97■□□□□ 0.47
SMC1BQ8NDV3 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 AC078875.1-201ENST00000431907 724 ntBASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 MEG3_2.1-201ENST00000611456 105 ntBASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 PTPN20CP-201ENST00000614090 920 ntBASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 AC002472.3-201ENST00000640124 621 ntBASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SMC1BQ8NDV3 FKBP4P6-201ENST00000457486 1332 ntBASIC17.96■□□□□ 0.46
SMC1BQ8NDV3 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
SMC1BQ8NDV3 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 123.9 ms