Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 AC106760.1-201ENST00000508690 800 ntBASIC14.29□□□□□ -0.12
BEST3Q8N1M1 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 SBF1P1-201ENST00000444527 5631 ntBASIC14.29□□□□□ -0.12
BEST3Q8N1M1 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
BEST3Q8N1M1 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 AGER-206ENST00000375070 1463 ntTSL 5 BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 TBCB-211ENST00000589996 724 ntTSL 3 BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
BEST3Q8N1M1 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
BEST3Q8N1M1 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
BEST3Q8N1M1 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC14.27□□□□□ -0.12
BEST3Q8N1M1 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
BEST3Q8N1M1 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
BEST3Q8N1M1 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
BEST3Q8N1M1 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
BEST3Q8N1M1 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC14.27□□□□□ -0.12
BEST3Q8N1M1 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
BEST3Q8N1M1 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC14.27□□□□□ -0.12
BEST3Q8N1M1 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC14.27□□□□□ -0.12
BEST3Q8N1M1 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
BEST3Q8N1M1 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
BEST3Q8N1M1 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
BEST3Q8N1M1 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC14.27□□□□□ -0.12
BEST3Q8N1M1 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
BEST3Q8N1M1 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.12
BEST3Q8N1M1 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
BEST3Q8N1M1 BRF1-202ENST00000379932 884 ntTSL 5 BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 AC092933.1-201ENST00000393644 945 ntBASIC14.27□□□□□ -0.13
BEST3Q8N1M1 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
BEST3Q8N1M1 USB1-202ENST00000423271 1217 ntTSL 2 BASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms