Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 AC138035.3-201ENST00000622706 2791 ntBASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 COPE-202ENST00000349893 948 ntTSL 2 BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 PTPA-220ENST00000436883 532 ntTSL 4 BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 AL162726.2-201ENST00000438986 1017 ntBASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 RN7SL752P-201ENST00000463779 287 ntBASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 AC124283.3-201ENST00000570869 594 ntBASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 AC107373.2-201ENST00000607735 490 ntBASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 CECR7-204ENST00000609932 568 ntTSL 2 BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 CU639417.3-201ENST00000624240 1404 ntBASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
NUP54Q7Z3B4 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
NUP54Q7Z3B4 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
NUP54Q7Z3B4 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
NUP54Q7Z3B4 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
NUP54Q7Z3B4 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
NUP54Q7Z3B4 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
NUP54Q7Z3B4 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
NUP54Q7Z3B4 BID-213ENST00000615414 2236 ntTSL 5 BASIC14.21□□□□□ -0.14
NUP54Q7Z3B4 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC14.21□□□□□ -0.14
NUP54Q7Z3B4 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
NUP54Q7Z3B4 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
NUP54Q7Z3B4 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 AC004066.1-201ENST00000502488 802 ntBASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 CR383656.12-201ENST00000549567 513 ntBASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 AC005225.4-201ENST00000557330 545 ntBASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms