Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC14.68□□□□□ -0.06
CLDN6P56747 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLDN6P56747 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.68□□□□□ -0.06
CLDN6P56747 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLDN6P56747 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC14.68□□□□□ -0.06
CLDN6P56747 AC069218.1-201ENST00000435269 762 ntBASIC14.68□□□□□ -0.06
CLDN6P56747 AC253536.4-201ENST00000440539 267 ntBASIC14.68□□□□□ -0.06
CLDN6P56747 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC14.68□□□□□ -0.06
CLDN6P56747 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC14.68□□□□□ -0.06
CLDN6P56747 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLDN6P56747 NUP210P1-202ENST00000504322 710 ntBASIC14.68□□□□□ -0.06
CLDN6P56747 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC14.68□□□□□ -0.06
CLDN6P56747 PRKXP1-201ENST00000561423 1122 ntBASIC14.68□□□□□ -0.06
CLDN6P56747 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC14.68□□□□□ -0.06
CLDN6P56747 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC14.68□□□□□ -0.06
CLDN6P56747 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLDN6P56747 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLDN6P56747 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC14.68□□□□□ -0.06
CLDN6P56747 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC14.68□□□□□ -0.06
CLDN6P56747 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLDN6P56747 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
CLDN6P56747 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLDN6P56747 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC14.68□□□□□ -0.06
CLDN6P56747 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLDN6P56747 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLDN6P56747 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLDN6P56747 AL513523.2-202ENST00000427283 2040 ntBASIC14.68□□□□□ -0.06
CLDN6P56747 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLDN6P56747 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLDN6P56747 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLDN6P56747 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLDN6P56747 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLDN6P56747 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLDN6P56747 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLDN6P56747 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLDN6P56747 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC14.67□□□□□ -0.06
CLDN6P56747 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLDN6P56747 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC14.67□□□□□ -0.06
CLDN6P56747 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC14.67□□□□□ -0.06
CLDN6P56747 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC14.67□□□□□ -0.06
CLDN6P56747 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLDN6P56747 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLDN6P56747 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLDN6P56747 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
CLDN6P56747 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLDN6P56747 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLDN6P56747 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLDN6P56747 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLDN6P56747 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLDN6P56747 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLDN6P56747 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLDN6P56747 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC14.67□□□□□ -0.06
CLDN6P56747 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
CLDN6P56747 EIF3FP3-201ENST00000434851 1086 ntBASIC14.67□□□□□ -0.06
CLDN6P56747 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC14.67□□□□□ -0.06
CLDN6P56747 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC14.67□□□□□ -0.06
CLDN6P56747 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC14.67□□□□□ -0.06
CLDN6P56747 AC100850.1-201ENST00000506768 649 ntBASIC14.67□□□□□ -0.06
CLDN6P56747 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC14.67□□□□□ -0.06
CLDN6P56747 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC14.67□□□□□ -0.06
CLDN6P56747 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC14.67□□□□□ -0.06
CLDN6P56747 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC14.67□□□□□ -0.06
CLDN6P56747 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC14.67□□□□□ -0.06
CLDN6P56747 KLK11-210ENST00000600362 759 ntTSL 3 BASIC14.67□□□□□ -0.06
CLDN6P56747 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC14.67□□□□□ -0.06
CLDN6P56747 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.67□□□□□ -0.06
CLDN6P56747 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
CLDN6P56747 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLDN6P56747 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLDN6P56747 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
CLDN6P56747 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLDN6P56747 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
CLDN6P56747 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLDN6P56747 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLDN6P56747 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLDN6P56747 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC14.67□□□□□ -0.06
CLDN6P56747 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLDN6P56747 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.67□□□□□ -0.06
CLDN6P56747 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.67□□□□□ -0.06
CLDN6P56747 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC14.67□□□□□ -0.06
CLDN6P56747 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLDN6P56747 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLDN6P56747 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC14.66□□□□□ -0.06
CLDN6P56747 TUBBP5-203ENST00000508529 1334 ntBASIC14.66□□□□□ -0.06
CLDN6P56747 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.66□□□□□ -0.06
CLDN6P56747 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLDN6P56747 AL158070.2-201ENST00000623713 1621 ntBASIC14.66□□□□□ -0.06
CLDN6P56747 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLDN6P56747 SP100-205ENST00000409824 1802 ntTSL 5 BASIC14.66□□□□□ -0.06
CLDN6P56747 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLDN6P56747 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLDN6P56747 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC14.66□□□□□ -0.06
CLDN6P56747 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLDN6P56747 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLDN6P56747 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLDN6P56747 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC14.66□□□□□ -0.06
CLDN6P56747 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.66□□□□□ -0.06
CLDN6P56747 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC14.66□□□□□ -0.06
CLDN6P56747 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
CLDN6P56747 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms