Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC023024.2-201ENST00000623561 1993 ntBASIC19.6■□□□□ 0.73
COL18A1P39060 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL18A1P39060 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
COL18A1P39060 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL18A1P39060 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL18A1P39060 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL18A1P39060 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL18A1P39060 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC19.6■□□□□ 0.73
COL18A1P39060 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL18A1P39060 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC19.6■□□□□ 0.73
COL18A1P39060 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL18A1P39060 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC19.6■□□□□ 0.73
COL18A1P39060 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC19.6■□□□□ 0.73
COL18A1P39060 AL035414.1-201ENST00000451327 857 ntBASIC19.6■□□□□ 0.73
COL18A1P39060 RN7SL818P-201ENST00000485099 259 ntBASIC19.6■□□□□ 0.73
COL18A1P39060 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC19.6■□□□□ 0.73
COL18A1P39060 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL18A1P39060 AC093752.3-201ENST00000567343 901 ntBASIC19.6■□□□□ 0.73
COL18A1P39060 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC19.6■□□□□ 0.73
COL18A1P39060 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
COL18A1P39060 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC19.6■□□□□ 0.73
COL18A1P39060 RN7SL725P-201ENST00000606439 259 ntBASIC19.6■□□□□ 0.73
COL18A1P39060 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC19.6■□□□□ 0.73
COL18A1P39060 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL18A1P39060 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC19.59■□□□□ 0.73
COL18A1P39060 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC19.59■□□□□ 0.73
COL18A1P39060 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL18A1P39060 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC19.59■□□□□ 0.73
COL18A1P39060 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL18A1P39060 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL18A1P39060 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL18A1P39060 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL18A1P39060 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC19.59■□□□□ 0.73
COL18A1P39060 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL18A1P39060 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL18A1P39060 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC19.59■□□□□ 0.73
COL18A1P39060 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL18A1P39060 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
COL18A1P39060 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC19.59■□□□□ 0.73
COL18A1P39060 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL18A1P39060 HNRNPA1P27-201ENST00000412087 955 ntBASIC19.59■□□□□ 0.73
COL18A1P39060 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC19.59■□□□□ 0.73
COL18A1P39060 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC19.59■□□□□ 0.73
COL18A1P39060 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL18A1P39060 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC19.59■□□□□ 0.73
COL18A1P39060 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC19.59■□□□□ 0.73
COL18A1P39060 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL18A1P39060 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL18A1P39060 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL18A1P39060 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL18A1P39060 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.58■□□□□ 0.73
COL18A1P39060 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL18A1P39060 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL18A1P39060 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL18A1P39060 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
COL18A1P39060 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
COL18A1P39060 JTB-202ENST00000356648 1040 ntTSL 2 BASIC19.58■□□□□ 0.73
COL18A1P39060 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
COL18A1P39060 CD164-210ENST00000512821 964 ntTSL 2 BASIC19.58■□□□□ 0.73
COL18A1P39060 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC19.58■□□□□ 0.73
COL18A1P39060 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC19.58■□□□□ 0.73
COL18A1P39060 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.73
COL18A1P39060 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL18A1P39060 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
COL18A1P39060 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
COL18A1P39060 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL18A1P39060 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL18A1P39060 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL18A1P39060 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC19.58■□□□□ 0.72
COL18A1P39060 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL18A1P39060 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC19.58■□□□□ 0.72
COL18A1P39060 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC19.58■□□□□ 0.72
COL18A1P39060 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL18A1P39060 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL18A1P39060 AL391005.1-201ENST00000623953 2435 ntBASIC19.57■□□□□ 0.72
COL18A1P39060 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
COL18A1P39060 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL18A1P39060 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL18A1P39060 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC19.57■□□□□ 0.72
COL18A1P39060 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC19.57■□□□□ 0.72
COL18A1P39060 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC19.57■□□□□ 0.72
COL18A1P39060 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL18A1P39060 AC020658.6-201ENST00000623564 1870 ntBASIC19.57■□□□□ 0.72
COL18A1P39060 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
COL18A1P39060 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL18A1P39060 LINC01815-202ENST00000641468 1409 ntBASIC19.57■□□□□ 0.72
COL18A1P39060 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL18A1P39060 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
COL18A1P39060 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC19.57■□□□□ 0.72
COL18A1P39060 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC19.57■□□□□ 0.72
COL18A1P39060 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL18A1P39060 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC19.57■□□□□ 0.72
COL18A1P39060 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC19.57■□□□□ 0.72
COL18A1P39060 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
COL18A1P39060 AL512306.1-201ENST00000432698 848 ntBASIC19.57■□□□□ 0.72
COL18A1P39060 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL18A1P39060 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
COL18A1P39060 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC19.57■□□□□ 0.72
COL18A1P39060 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC19.57■□□□□ 0.72
COL18A1P39060 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms