Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
SHMT2P34897 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
SHMT2P34897 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHMT2P34897 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
SHMT2P34897 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
SHMT2P34897 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
SHMT2P34897 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHMT2P34897 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
SHMT2P34897 AC087481.3-201ENST00000602886 1894 ntBASIC15.06■□□□□ 0
SHMT2P34897 AC139749.1-202ENST00000617529 3139 ntBASIC15.06■□□□□ 0
SHMT2P34897 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
SHMT2P34897 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC15.05■□□□□ 0
SHMT2P34897 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
SHMT2P34897 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC15.05■□□□□ 0
SHMT2P34897 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC15.05■□□□□ 0
SHMT2P34897 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.05■□□□□ 0
SHMT2P34897 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC15.05■□□□□ 0
SHMT2P34897 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
SHMT2P34897 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
SHMT2P34897 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC15.05■□□□□ 0
SHMT2P34897 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC15.05■□□□□ -0
SHMT2P34897 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.05■□□□□ -0
SHMT2P34897 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SHMT2P34897 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SHMT2P34897 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SHMT2P34897 SOCS2P1-201ENST00000417727 557 ntBASIC15.05■□□□□ -0
SHMT2P34897 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC15.05■□□□□ -0
SHMT2P34897 PTPA-220ENST00000436883 532 ntTSL 4 BASIC15.05■□□□□ -0
SHMT2P34897 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC15.05■□□□□ -0
SHMT2P34897 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC15.05■□□□□ -0
SHMT2P34897 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC15.05■□□□□ -0
SHMT2P34897 RN7SL752P-201ENST00000463779 287 ntBASIC15.05■□□□□ -0
SHMT2P34897 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC15.05■□□□□ -0
SHMT2P34897 NEU3-203ENST00000529024 581 ntTSL 3 BASIC15.05■□□□□ -0
SHMT2P34897 AC120045.2-201ENST00000567334 178 ntBASIC15.05■□□□□ -0
SHMT2P34897 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC15.05■□□□□ -0
SHMT2P34897 AC025181.2-201ENST00000606994 802 ntBASIC15.05■□□□□ -0
SHMT2P34897 WFDC1-204ENST00000613603 549 ntBASIC15.05■□□□□ -0
SHMT2P34897 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC15.05■□□□□ -0
SHMT2P34897 GPR39-203ENST00000622084 900 ntTSL 5 BASIC15.05■□□□□ -0
SHMT2P34897 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
SHMT2P34897 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC15.05■□□□□ -0
SHMT2P34897 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SHMT2P34897 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SHMT2P34897 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
SHMT2P34897 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
SHMT2P34897 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SHMT2P34897 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC15.05■□□□□ -0
SHMT2P34897 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
SHMT2P34897 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
SHMT2P34897 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SHMT2P34897 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
SHMT2P34897 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ -0
SHMT2P34897 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC15.05■□□□□ -0
SHMT2P34897 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.05■□□□□ -0
SHMT2P34897 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SHMT2P34897 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ -0
SHMT2P34897 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.05■□□□□ -0
SHMT2P34897 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SHMT2P34897 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SHMT2P34897 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ -0
SHMT2P34897 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SHMT2P34897 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
SHMT2P34897 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SHMT2P34897 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC15.04■□□□□ -0
SHMT2P34897 AC007191.1-201ENST00000623179 2995 ntBASIC15.04■□□□□ -0
SHMT2P34897 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC15.04■□□□□ -0
SHMT2P34897 GSN-215ENST00000545652 2428 ntTSL 2 BASIC15.04■□□□□ -0
SHMT2P34897 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC15.04■□□□□ -0
SHMT2P34897 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC15.04■□□□□ -0
SHMT2P34897 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.04■□□□□ -0
SHMT2P34897 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
SHMT2P34897 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SHMT2P34897 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC15.04■□□□□ -0
SHMT2P34897 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC15.04■□□□□ -0
SHMT2P34897 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
SHMT2P34897 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.04■□□□□ -0
SHMT2P34897 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.04■□□□□ -0
SHMT2P34897 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
SHMT2P34897 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
SHMT2P34897 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.04■□□□□ -0
SHMT2P34897 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SHMT2P34897 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SHMT2P34897 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
SHMT2P34897 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SHMT2P34897 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC15.04■□□□□ -0
SHMT2P34897 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC15.04■□□□□ -0
SHMT2P34897 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.04■□□□□ -0
SHMT2P34897 C1QBPP1-201ENST00000400117 770 ntBASIC15.04■□□□□ -0
SHMT2P34897 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
SHMT2P34897 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
SHMT2P34897 COX5BP8-201ENST00000416911 349 ntBASIC15.04■□□□□ -0
SHMT2P34897 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC15.04■□□□□ -0
SHMT2P34897 PNKD-204ENST00000436005 978 ntTSL 5 BASIC15.04■□□□□ -0
SHMT2P34897 AL162726.2-201ENST00000438986 1017 ntBASIC15.04■□□□□ -0
SHMT2P34897 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC15.04■□□□□ -0
SHMT2P34897 AC026410.3-201ENST00000514280 936 ntBASIC15.04■□□□□ -0
SHMT2P34897 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC15.04■□□□□ -0
SHMT2P34897 CR383656.12-201ENST00000549567 513 ntBASIC15.04■□□□□ -0
SHMT2P34897 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms