Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA1O95477 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC12.93□□□□□ -0.34
ABCA1O95477 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC12.93□□□□□ -0.34
ABCA1O95477 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA1O95477 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA1O95477 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA1O95477 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA1O95477 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
ABCA1O95477 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA1O95477 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA1O95477 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC12.93□□□□□ -0.34
ABCA1O95477 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA1O95477 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA1O95477 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA1O95477 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC12.93□□□□□ -0.34
ABCA1O95477 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
ABCA1O95477 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC12.93□□□□□ -0.34
ABCA1O95477 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA1O95477 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA1O95477 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA1O95477 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA1O95477 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA1O95477 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA1O95477 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC12.92□□□□□ -0.34
ABCA1O95477 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA1O95477 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC12.92□□□□□ -0.34
ABCA1O95477 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA1O95477 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC12.92□□□□□ -0.34
ABCA1O95477 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
ABCA1O95477 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC12.92□□□□□ -0.34
ABCA1O95477 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA1O95477 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC12.92□□□□□ -0.34
ABCA1O95477 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA1O95477 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC12.92□□□□□ -0.34
ABCA1O95477 ATF5-205ENST00000600336 682 ntTSL 2 BASIC12.92□□□□□ -0.34
ABCA1O95477 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC12.92□□□□□ -0.34
ABCA1O95477 AC138627.1-207ENST00000641560 1006 ntBASIC12.92□□□□□ -0.34
ABCA1O95477 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
ABCA1O95477 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
ABCA1O95477 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA1O95477 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
ABCA1O95477 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
ABCA1O95477 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC12.92□□□□□ -0.34
ABCA1O95477 FOS-202ENST00000535987 1402 ntTSL 2 BASIC12.92□□□□□ -0.34
ABCA1O95477 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
ABCA1O95477 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC12.92□□□□□ -0.34
ABCA1O95477 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA1O95477 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA1O95477 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC12.92□□□□□ -0.34
ABCA1O95477 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA1O95477 SP100-205ENST00000409824 1802 ntTSL 5 BASIC12.92□□□□□ -0.34
ABCA1O95477 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA1O95477 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA1O95477 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA1O95477 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC12.92□□□□□ -0.34
ABCA1O95477 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC12.92□□□□□ -0.34
ABCA1O95477 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
ABCA1O95477 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC12.92□□□□□ -0.34
ABCA1O95477 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC12.92□□□□□ -0.34
ABCA1O95477 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA1O95477 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA1O95477 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC12.92□□□□□ -0.34
ABCA1O95477 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC12.92□□□□□ -0.34
ABCA1O95477 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC12.92□□□□□ -0.34
ABCA1O95477 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA1O95477 AC006001.1-201ENST00000325130 474 ntBASIC12.92□□□□□ -0.34
ABCA1O95477 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA1O95477 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
ABCA1O95477 SLC25A24P2-201ENST00000415059 510 ntBASIC12.92□□□□□ -0.34
ABCA1O95477 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC12.92□□□□□ -0.34
ABCA1O95477 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC12.92□□□□□ -0.34
ABCA1O95477 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC12.92□□□□□ -0.34
ABCA1O95477 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC12.92□□□□□ -0.34
ABCA1O95477 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC12.92□□□□□ -0.34
ABCA1O95477 KC6-205ENST00000599934 556 ntTSL 4 BASIC12.92□□□□□ -0.34
ABCA1O95477 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC12.92□□□□□ -0.34
ABCA1O95477 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC12.92□□□□□ -0.34
ABCA1O95477 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
ABCA1O95477 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA1O95477 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA1O95477 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
ABCA1O95477 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA1O95477 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
ABCA1O95477 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
ABCA1O95477 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA1O95477 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC12.92□□□□□ -0.34
ABCA1O95477 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC12.92□□□□□ -0.34
ABCA1O95477 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA1O95477 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC12.91□□□□□ -0.34
ABCA1O95477 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC12.91□□□□□ -0.34
ABCA1O95477 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC12.91□□□□□ -0.34
ABCA1O95477 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC12.91□□□□□ -0.34
ABCA1O95477 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC12.91□□□□□ -0.34
ABCA1O95477 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
ABCA1O95477 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
ABCA1O95477 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
ABCA1O95477 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC12.91□□□□□ -0.34
ABCA1O95477 SESN3-203ENST00000536441 9558 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
ABCA1O95477 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
ABCA1O95477 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC12.91□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms