Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC15.11■□□□□ 0.01
VPS4BO75351 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
VPS4BO75351 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.11■□□□□ 0.01
VPS4BO75351 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4BO75351 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC15.11■□□□□ 0.01
VPS4BO75351 RARRES2P9-201ENST00000565168 469 ntBASIC15.11■□□□□ 0.01
VPS4BO75351 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC15.11■□□□□ 0.01
VPS4BO75351 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC15.11■□□□□ 0.01
VPS4BO75351 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC15.11■□□□□ 0.01
VPS4BO75351 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4BO75351 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.11■□□□□ 0.01
VPS4BO75351 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.11■□□□□ 0.01
VPS4BO75351 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4BO75351 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4BO75351 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4BO75351 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC15.11■□□□□ 0.01
VPS4BO75351 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4BO75351 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4BO75351 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
VPS4BO75351 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4BO75351 AC023908.3-201ENST00000564211 3047 ntBASIC15.11■□□□□ 0.01
VPS4BO75351 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
VPS4BO75351 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4BO75351 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4BO75351 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
VPS4BO75351 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
VPS4BO75351 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4BO75351 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4BO75351 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4BO75351 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4BO75351 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4BO75351 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4BO75351 RER1-203ENST00000378513 3000 ntTSL 3 BASIC15.1■□□□□ 0.01
VPS4BO75351 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
VPS4BO75351 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS4BO75351 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4BO75351 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4BO75351 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.1■□□□□ 0.01
VPS4BO75351 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4BO75351 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4BO75351 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
VPS4BO75351 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4BO75351 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS4BO75351 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC15.1■□□□□ 0.01
VPS4BO75351 AL353705.2-201ENST00000428243 662 ntBASIC15.1■□□□□ 0.01
VPS4BO75351 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS4BO75351 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS4BO75351 AC011495.1-201ENST00000498085 584 ntBASIC15.1■□□□□ 0.01
VPS4BO75351 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4BO75351 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4BO75351 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.1■□□□□ 0.01
VPS4BO75351 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
VPS4BO75351 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC15.1■□□□□ 0.01
VPS4BO75351 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4BO75351 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4BO75351 MPI-209ENST00000564003 1195 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS4BO75351 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.1■□□□□ 0.01
VPS4BO75351 ARL16-202ENST00000570561 768 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS4BO75351 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS4BO75351 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4BO75351 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS4BO75351 AL132655.2-201ENST00000596276 594 ntBASIC15.1■□□□□ 0.01
VPS4BO75351 SPDYE12P-201ENST00000618416 771 ntBASIC15.1■□□□□ 0.01
VPS4BO75351 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
VPS4BO75351 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4BO75351 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4BO75351 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS4BO75351 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
VPS4BO75351 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4BO75351 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC15.1■□□□□ 0.01
VPS4BO75351 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
VPS4BO75351 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4BO75351 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4BO75351 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4BO75351 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
VPS4BO75351 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4BO75351 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4BO75351 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4BO75351 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
VPS4BO75351 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
VPS4BO75351 AC007191.1-201ENST00000623179 2995 ntBASIC15.09■□□□□ 0.01
VPS4BO75351 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4BO75351 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.09■□□□□ 0.01
VPS4BO75351 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4BO75351 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4BO75351 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4BO75351 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4BO75351 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4BO75351 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4BO75351 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4BO75351 LINC00552-201ENST00000625151 2579 ntBASIC15.09■□□□□ 0.01
VPS4BO75351 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4BO75351 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC15.09■□□□□ 0.01
VPS4BO75351 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC15.09■□□□□ 0.01
VPS4BO75351 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC15.09■□□□□ 0.01
VPS4BO75351 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4BO75351 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4BO75351 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
VPS4BO75351 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4BO75351 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms