Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
PCDHGA1Q9Y5H4 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
PCDHGA1Q9Y5H4 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC14.71□□□□□ -0.05
PCDHGA1Q9Y5H4 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PCDHGA1Q9Y5H4 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PCDHGA1Q9Y5H4 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.06
PCDHGA1Q9Y5H4 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
PCDHGA1Q9Y5H4 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
PCDHGA1Q9Y5H4 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
PCDHGA1Q9Y5H4 LINC02199-201ENST00000506655 2702 ntBASIC14.71□□□□□ -0.06
PCDHGA1Q9Y5H4 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
PCDHGA1Q9Y5H4 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 AC092171.3-201ENST00000610122 2651 ntBASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 MIR33B-201ENST00000385104 96 ntBASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 MSRA-203ENST00000441698 788 ntTSL 2 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 AC022616.1-201ENST00000518688 554 ntBASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 AC024681.1-201ENST00000521917 487 ntBASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 SYT17-208ENST00000568433 812 ntTSL 3 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 MYB-242ENST00000618728 3545 ntTSL 5 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 AGK-211ENST00000629555 2765 ntTSL 5 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PCDHGA1Q9Y5H4 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 DPM3-202ENST00000368399 517 ntBASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 MPV17-204ENST00000399052 749 ntTSL 4 BASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 HIST2H2BB-201ENST00000449108 381 ntBASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 AC021723.1-201ENST00000486306 515 ntBASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 AC134698.3-201ENST00000523880 214 ntBASIC14.69□□□□□ -0.06
PCDHGA1Q9Y5H4 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms