Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC28.8■■■□□ 2.2
SHROOM4Q9ULL8 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC28.8■■■□□ 2.2
SHROOM4Q9ULL8 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC28.8■■■□□ 2.2
SHROOM4Q9ULL8 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
SHROOM4Q9ULL8 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
SHROOM4Q9ULL8 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
SHROOM4Q9ULL8 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
SHROOM4Q9ULL8 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC28.79■■■□□ 2.2
SHROOM4Q9ULL8 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
SHROOM4Q9ULL8 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC28.79■■■□□ 2.2
SHROOM4Q9ULL8 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC28.79■■■□□ 2.2
SHROOM4Q9ULL8 AC135983.4-201ENST00000564116 1262 ntBASIC28.79■■■□□ 2.2
SHROOM4Q9ULL8 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
SHROOM4Q9ULL8 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
SHROOM4Q9ULL8 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
SHROOM4Q9ULL8 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
SHROOM4Q9ULL8 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC28.79■■■□□ 2.2
SHROOM4Q9ULL8 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC28.79■■■□□ 2.2
SHROOM4Q9ULL8 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
SHROOM4Q9ULL8 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 AC020922.3-201ENST00000595064 547 ntBASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 REXO1L5P-201ENST00000622260 2098 ntBASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 ANKRD30BP2-201ENST00000435744 1610 ntBASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 AC004066.1-201ENST00000502488 802 ntBASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC28.78■■■□□ 2.2
SHROOM4Q9ULL8 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC28.77■■■□□ 2.2
SHROOM4Q9ULL8 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC28.77■■■□□ 2.2
SHROOM4Q9ULL8 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC28.77■■■□□ 2.2
SHROOM4Q9ULL8 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
SHROOM4Q9ULL8 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
SHROOM4Q9ULL8 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC28.77■■■□□ 2.2
SHROOM4Q9ULL8 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC28.77■■■□□ 2.2
SHROOM4Q9ULL8 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC28.77■■■□□ 2.2
SHROOM4Q9ULL8 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC28.77■■■□□ 2.2
SHROOM4Q9ULL8 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC28.77■■■□□ 2.2
SHROOM4Q9ULL8 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
SHROOM4Q9ULL8 ISCA2P1-201ENST00000425548 448 ntBASIC28.77■■■□□ 2.2
SHROOM4Q9ULL8 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC28.77■■■□□ 2.2
SHROOM4Q9ULL8 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
SHROOM4Q9ULL8 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC28.77■■■□□ 2.2
SHROOM4Q9ULL8 AC103691.2-201ENST00000618824 433 ntBASIC28.77■■■□□ 2.2
SHROOM4Q9ULL8 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
SHROOM4Q9ULL8 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC28.77■■■□□ 2.2
SHROOM4Q9ULL8 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC28.77■■■□□ 2.2
SHROOM4Q9ULL8 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC28.77■■■□□ 2.2
SHROOM4Q9ULL8 AL365203.3-201ENST00000609742 2057 ntBASIC28.77■■■□□ 2.2
SHROOM4Q9ULL8 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
SHROOM4Q9ULL8 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
SHROOM4Q9ULL8 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC28.76■■■□□ 2.2
SHROOM4Q9ULL8 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.2
SHROOM4Q9ULL8 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC28.76■■■□□ 2.2
SHROOM4Q9ULL8 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC28.76■■■□□ 2.2
SHROOM4Q9ULL8 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
SHROOM4Q9ULL8 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC28.76■■■□□ 2.19
SHROOM4Q9ULL8 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
SHROOM4Q9ULL8 BID-213ENST00000615414 2236 ntTSL 5 BASIC28.76■■■□□ 2.19
SHROOM4Q9ULL8 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
SHROOM4Q9ULL8 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
SHROOM4Q9ULL8 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC28.76■■■□□ 2.19
SHROOM4Q9ULL8 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC28.76■■■□□ 2.19
SHROOM4Q9ULL8 MDH2-205ENST00000461263 648 ntTSL 2 BASIC28.76■■■□□ 2.19
SHROOM4Q9ULL8 AC125604.1-201ENST00000496255 707 ntBASIC28.76■■■□□ 2.19
SHROOM4Q9ULL8 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
SHROOM4Q9ULL8 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC28.76■■■□□ 2.19
SHROOM4Q9ULL8 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC28.76■■■□□ 2.19
SHROOM4Q9ULL8 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC28.76■■■□□ 2.19
SHROOM4Q9ULL8 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC28.76■■■□□ 2.19
SHROOM4Q9ULL8 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC28.76■■■□□ 2.19
SHROOM4Q9ULL8 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
SHROOM4Q9ULL8 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC28.76■■■□□ 2.19
SHROOM4Q9ULL8 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
SHROOM4Q9ULL8 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
SHROOM4Q9ULL8 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC28.76■■■□□ 2.19
SHROOM4Q9ULL8 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC28.76■■■□□ 2.19
SHROOM4Q9ULL8 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC28.75■■■□□ 2.19
SHROOM4Q9ULL8 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
SHROOM4Q9ULL8 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC28.75■■■□□ 2.19
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms