Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC19.22■□□□□ 0.67
SCN11AQ9UI33 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SCN11AQ9UI33 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SCN11AQ9UI33 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SCN11AQ9UI33 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC19.22■□□□□ 0.67
SCN11AQ9UI33 SCARNA21-201ENST00000517026 139 ntBASIC19.22■□□□□ 0.67
SCN11AQ9UI33 IGLV3-15-201ENST00000518356 244 ntBASIC19.22■□□□□ 0.67
SCN11AQ9UI33 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC19.22■□□□□ 0.67
SCN11AQ9UI33 NAT9-224ENST00000583757 583 ntTSL 3 BASIC19.22■□□□□ 0.67
SCN11AQ9UI33 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC19.22■□□□□ 0.67
SCN11AQ9UI33 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC19.22■□□□□ 0.67
SCN11AQ9UI33 AL353770.1-201ENST00000614915 403 ntBASIC19.22■□□□□ 0.67
SCN11AQ9UI33 NAP1L6-202ENST00000641404 1222 ntBASIC19.22■□□□□ 0.67
SCN11AQ9UI33 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SCN11AQ9UI33 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC19.22■□□□□ 0.67
SCN11AQ9UI33 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SCN11AQ9UI33 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SCN11AQ9UI33 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
SCN11AQ9UI33 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC19.22■□□□□ 0.67
SCN11AQ9UI33 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SCN11AQ9UI33 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC19.22■□□□□ 0.67
SCN11AQ9UI33 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
SCN11AQ9UI33 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SCN11AQ9UI33 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SCN11AQ9UI33 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SCN11AQ9UI33 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 KHSRPP1-201ENST00000427983 1768 ntBASIC19.21■□□□□ 0.67
SCN11AQ9UI33 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 LINC01165-201ENST00000445190 1623 ntBASIC19.21■□□□□ 0.67
SCN11AQ9UI33 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 AC069218.1-201ENST00000435269 762 ntBASIC19.21■□□□□ 0.67
SCN11AQ9UI33 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 AC012044.1-201ENST00000603431 297 ntBASIC19.21■□□□□ 0.67
SCN11AQ9UI33 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCN11AQ9UI33 TMBIM7P-202ENST00000641474 1516 ntBASIC19.21■□□□□ 0.67
SCN11AQ9UI33 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC19.21■□□□□ 0.66
SCN11AQ9UI33 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SCN11AQ9UI33 LCK-206ENST00000373564 2137 ntTSL 5 BASIC19.2■□□□□ 0.66
SCN11AQ9UI33 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCN11AQ9UI33 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCN11AQ9UI33 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCN11AQ9UI33 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC19.2■□□□□ 0.66
SCN11AQ9UI33 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
SCN11AQ9UI33 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCN11AQ9UI33 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCN11AQ9UI33 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC19.2■□□□□ 0.66
SCN11AQ9UI33 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SCN11AQ9UI33 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC19.2■□□□□ 0.66
SCN11AQ9UI33 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC19.2■□□□□ 0.66
SCN11AQ9UI33 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCN11AQ9UI33 XBP1P1-201ENST00000436573 652 ntBASIC19.2■□□□□ 0.66
SCN11AQ9UI33 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC19.2■□□□□ 0.66
SCN11AQ9UI33 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC19.2■□□□□ 0.66
SCN11AQ9UI33 AC092299.1-201ENST00000632679 757 ntBASIC19.2■□□□□ 0.66
SCN11AQ9UI33 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCN11AQ9UI33 AC144522.1-201ENST00000625111 1658 ntBASIC19.2■□□□□ 0.66
SCN11AQ9UI33 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCN11AQ9UI33 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCN11AQ9UI33 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC19.2■□□□□ 0.66
SCN11AQ9UI33 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SCN11AQ9UI33 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC19.19■□□□□ 0.66
SCN11AQ9UI33 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SCN11AQ9UI33 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC19.19■□□□□ 0.66
SCN11AQ9UI33 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SCN11AQ9UI33 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
SCN11AQ9UI33 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
SCN11AQ9UI33 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SCN11AQ9UI33 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC19.19■□□□□ 0.66
SCN11AQ9UI33 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
SCN11AQ9UI33 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC19.19■□□□□ 0.66
SCN11AQ9UI33 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC19.19■□□□□ 0.66
SCN11AQ9UI33 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
SCN11AQ9UI33 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC19.19■□□□□ 0.66
SCN11AQ9UI33 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.19■□□□□ 0.66
SCN11AQ9UI33 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SCN11AQ9UI33 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms