Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
MMP28Q9H239 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MMP28Q9H239 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
MMP28Q9H239 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC13.66□□□□□ -0.22
MMP28Q9H239 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
MMP28Q9H239 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
MMP28Q9H239 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
MMP28Q9H239 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC13.66□□□□□ -0.22
MMP28Q9H239 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MMP28Q9H239 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
MMP28Q9H239 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MMP28Q9H239 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MMP28Q9H239 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
MMP28Q9H239 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
MMP28Q9H239 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MMP28Q9H239 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
MMP28Q9H239 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC13.66□□□□□ -0.22
MMP28Q9H239 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
MMP28Q9H239 AC007967.2-201ENST00000432613 625 ntBASIC13.66□□□□□ -0.22
MMP28Q9H239 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC13.66□□□□□ -0.22
MMP28Q9H239 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
MMP28Q9H239 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC13.66□□□□□ -0.22
MMP28Q9H239 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
MMP28Q9H239 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC13.66□□□□□ -0.22
MMP28Q9H239 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC13.66□□□□□ -0.22
MMP28Q9H239 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC13.66□□□□□ -0.22
MMP28Q9H239 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MMP28Q9H239 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC13.66□□□□□ -0.22
MMP28Q9H239 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC13.66□□□□□ -0.22
MMP28Q9H239 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC13.66□□□□□ -0.22
MMP28Q9H239 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC13.66□□□□□ -0.22
MMP28Q9H239 AC007064.4-201ENST00000637740 555 ntBASIC13.66□□□□□ -0.22
MMP28Q9H239 AP001267.2-201ENST00000532619 2086 ntBASIC13.66□□□□□ -0.22
MMP28Q9H239 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
MMP28Q9H239 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MMP28Q9H239 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MMP28Q9H239 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
MMP28Q9H239 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
MMP28Q9H239 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
MMP28Q9H239 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
MMP28Q9H239 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
MMP28Q9H239 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
MMP28Q9H239 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
MMP28Q9H239 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
MMP28Q9H239 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MMP28Q9H239 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
MMP28Q9H239 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MMP28Q9H239 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC13.65□□□□□ -0.22
MMP28Q9H239 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC13.65□□□□□ -0.22
MMP28Q9H239 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MMP28Q9H239 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MMP28Q9H239 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC13.65□□□□□ -0.22
MMP28Q9H239 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
MMP28Q9H239 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC13.65□□□□□ -0.22
MMP28Q9H239 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
MMP28Q9H239 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
MMP28Q9H239 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
MMP28Q9H239 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MMP28Q9H239 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
MMP28Q9H239 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC13.65□□□□□ -0.22
MMP28Q9H239 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MMP28Q9H239 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
MMP28Q9H239 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
MMP28Q9H239 UPF3AP3-201ENST00000420996 769 ntBASIC13.65□□□□□ -0.22
MMP28Q9H239 FAM8A3P-201ENST00000427218 844 ntBASIC13.65□□□□□ -0.22
MMP28Q9H239 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
MMP28Q9H239 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MMP28Q9H239 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC13.65□□□□□ -0.22
MMP28Q9H239 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC13.65□□□□□ -0.22
MMP28Q9H239 RNA5SP416-201ENST00000516838 111 ntBASIC13.65□□□□□ -0.22
MMP28Q9H239 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC13.65□□□□□ -0.22
MMP28Q9H239 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC13.65□□□□□ -0.22
MMP28Q9H239 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC13.65□□□□□ -0.22
MMP28Q9H239 AL031432.2-201ENST00000566714 459 ntBASIC13.65□□□□□ -0.22
MMP28Q9H239 USP31-203ENST00000567975 2142 ntTSL 2 BASIC13.65□□□□□ -0.22
MMP28Q9H239 AL928711.1-201ENST00000570165 459 ntBASIC13.65□□□□□ -0.22
MMP28Q9H239 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
MMP28Q9H239 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MMP28Q9H239 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
MMP28Q9H239 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
MMP28Q9H239 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MMP28Q9H239 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
MMP28Q9H239 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
MMP28Q9H239 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC13.65□□□□□ -0.22
MMP28Q9H239 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
MMP28Q9H239 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MMP28Q9H239 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MMP28Q9H239 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
MMP28Q9H239 MST1P2-201ENST00000457982 2291 ntBASIC13.65□□□□□ -0.22
MMP28Q9H239 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MMP28Q9H239 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
MMP28Q9H239 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MMP28Q9H239 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MMP28Q9H239 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC13.65□□□□□ -0.22
MMP28Q9H239 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC13.65□□□□□ -0.22
MMP28Q9H239 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
MMP28Q9H239 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC13.64□□□□□ -0.23
MMP28Q9H239 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC13.64□□□□□ -0.23
MMP28Q9H239 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC13.64□□□□□ -0.23
MMP28Q9H239 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC13.64□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms