Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
USB1Q9BQ65 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC13.9□□□□□ -0.18
USB1Q9BQ65 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
USB1Q9BQ65 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
USB1Q9BQ65 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
USB1Q9BQ65 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC13.9□□□□□ -0.18
USB1Q9BQ65 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC13.9□□□□□ -0.18
USB1Q9BQ65 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
USB1Q9BQ65 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC13.9□□□□□ -0.18
USB1Q9BQ65 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
USB1Q9BQ65 AL023775.1-201ENST00000454907 1746 ntBASIC13.9□□□□□ -0.18
USB1Q9BQ65 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
USB1Q9BQ65 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
USB1Q9BQ65 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.19
USB1Q9BQ65 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC13.9□□□□□ -0.19
USB1Q9BQ65 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.19
USB1Q9BQ65 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 PKIG-203ENST00000372887 769 ntTSL 3 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 AP006294.1-201ENST00000415407 339 ntBASIC13.89□□□□□ -0.19
USB1Q9BQ65 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 NME2P1-201ENST00000426182 414 ntBASIC13.89□□□□□ -0.19
USB1Q9BQ65 AC005034.1-201ENST00000426657 489 ntBASIC13.89□□□□□ -0.19
USB1Q9BQ65 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 FTH1-202ENST00000526640 786 ntTSL 2 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 AL596325.1-201ENST00000563991 1082 ntBASIC13.89□□□□□ -0.19
USB1Q9BQ65 ARL16-202ENST00000570561 768 ntTSL 2 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
USB1Q9BQ65 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
USB1Q9BQ65 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
USB1Q9BQ65 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
USB1Q9BQ65 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC13.88□□□□□ -0.19
USB1Q9BQ65 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
USB1Q9BQ65 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC13.88□□□□□ -0.19
USB1Q9BQ65 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
USB1Q9BQ65 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC13.88□□□□□ -0.19
USB1Q9BQ65 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
USB1Q9BQ65 AC118758.2-201ENST00000614242 2813 ntBASIC13.88□□□□□ -0.19
USB1Q9BQ65 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
USB1Q9BQ65 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC13.88□□□□□ -0.19
USB1Q9BQ65 LMO3-212ENST00000535535 1488 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
USB1Q9BQ65 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
USB1Q9BQ65 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
USB1Q9BQ65 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC13.88□□□□□ -0.19
USB1Q9BQ65 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
USB1Q9BQ65 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
USB1Q9BQ65 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
USB1Q9BQ65 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC13.88□□□□□ -0.19
USB1Q9BQ65 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
USB1Q9BQ65 TOMM22P5-201ENST00000416399 439 ntBASIC13.88□□□□□ -0.19
USB1Q9BQ65 AC136604.1-201ENST00000418535 575 ntBASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms