Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 NME6-203ENST00000415644 849 ntTSL 2 BASIC16.72■□□□□ 0.27
VPS52Q8N1B4 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS52Q8N1B4 YBX1P6-201ENST00000442962 1002 ntBASIC16.72■□□□□ 0.27
VPS52Q8N1B4 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC16.72■□□□□ 0.27
VPS52Q8N1B4 AC079316.1-201ENST00000548397 411 ntBASIC16.72■□□□□ 0.27
VPS52Q8N1B4 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC16.72■□□□□ 0.27
VPS52Q8N1B4 SNX12-206ENST00000622259 661 ntTSL 5 BASIC16.72■□□□□ 0.27
VPS52Q8N1B4 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC16.72■□□□□ 0.27
VPS52Q8N1B4 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS52Q8N1B4 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS52Q8N1B4 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC16.72■□□□□ 0.27
VPS52Q8N1B4 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.72■□□□□ 0.27
VPS52Q8N1B4 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS52Q8N1B4 AC112504.1-201ENST00000623415 1841 ntBASIC16.72■□□□□ 0.27
VPS52Q8N1B4 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.72■□□□□ 0.27
VPS52Q8N1B4 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS52Q8N1B4 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS52Q8N1B4 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS52Q8N1B4 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS52Q8N1B4 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS52Q8N1B4 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS52Q8N1B4 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS52Q8N1B4 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.72■□□□□ 0.27
VPS52Q8N1B4 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS52Q8N1B4 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS52Q8N1B4 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.72■□□□□ 0.27
VPS52Q8N1B4 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS52Q8N1B4 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS52Q8N1B4 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 MPV17-206ENST00000402722 827 ntTSL 3 BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 AC026410.3-201ENST00000514280 936 ntBASIC16.71■□□□□ 0.27
VPS52Q8N1B4 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 AC010328.2-201ENST00000597698 1111 ntBASIC16.71■□□□□ 0.27
VPS52Q8N1B4 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC16.71■□□□□ 0.27
VPS52Q8N1B4 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
VPS52Q8N1B4 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 AC020907.1-201ENST00000616460 1350 ntBASIC16.7■□□□□ 0.26
VPS52Q8N1B4 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 BRF1-202ENST00000379932 884 ntTSL 5 BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 AC026954.1-201ENST00000429771 1293 ntBASIC16.7■□□□□ 0.26
VPS52Q8N1B4 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 AC108725.1-201ENST00000495472 409 ntBASIC16.7■□□□□ 0.26
VPS52Q8N1B4 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 AGER-214ENST00000538695 487 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 AP005117.1-202ENST00000581724 1908 ntBASIC16.7■□□□□ 0.26
VPS52Q8N1B4 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms