Protein–RNA interactions for Protein: Q6STE5

SMARCD3, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3, humanhuman

Predictions only

Length 483 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3Q6STE5 AC005912.2-201ENST00000619492 2400 ntBASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 AC004461.1-201ENST00000412461 403 ntBASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 MTND6P24-201ENST00000440466 518 ntBASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 AC093520.2-201ENST00000561830 333 ntBASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
SMARCD3Q6STE5 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
SMARCD3Q6STE5 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
SMARCD3Q6STE5 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
SMARCD3Q6STE5 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 GPS2P2-201ENST00000430745 888 ntBASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 SPDYE14P-201ENST00000442619 822 ntBASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 YBX1P5-201ENST00000509441 847 ntBASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 AP000344.2-201ENST00000512987 629 ntBASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 PRR29-209ENST00000582540 967 ntTSL 2 BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 MIR4469-201ENST00000583919 79 ntBASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
SMARCD3Q6STE5 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.07□□□□□ -0.16
SMARCD3Q6STE5 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC14.07□□□□□ -0.16
SMARCD3Q6STE5 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.07□□□□□ -0.16
SMARCD3Q6STE5 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC14.07□□□□□ -0.16
SMARCD3Q6STE5 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.07□□□□□ -0.16
SMARCD3Q6STE5 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SMARCD3Q6STE5 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC14.07□□□□□ -0.16
SMARCD3Q6STE5 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC14.07□□□□□ -0.16
SMARCD3Q6STE5 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.07□□□□□ -0.16
SMARCD3Q6STE5 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SMARCD3Q6STE5 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SMARCD3Q6STE5 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
SMARCD3Q6STE5 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SMARCD3Q6STE5 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
SMARCD3Q6STE5 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms