Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 AC023310.3-201ENST00000557027 670 ntBASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 AC100756.1-201ENST00000562736 682 ntBASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 AC138749.3-201ENST00000567691 622 ntBASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 AC116165.1-201ENST00000611806 668 ntBASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 BASP1P1-201ENST00000430708 665 ntBASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 RHOA-206ENST00000454011 889 ntTSL 2 BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 UGT1A2P-201ENST00000454886 866 ntBASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 AL512638.1-201ENST00000457493 794 ntBASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 REEP4-207ENST00000523293 913 ntTSL 3 BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF549Q6P9A3 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF549Q6P9A3 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF549Q6P9A3 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF549Q6P9A3 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC15.24■□□□□ 0.03
ZNF549Q6P9A3 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF549Q6P9A3 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
ZNF549Q6P9A3 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF549Q6P9A3 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF549Q6P9A3 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
ZNF549Q6P9A3 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
ZNF549Q6P9A3 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF549Q6P9A3 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF549Q6P9A3 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.24■□□□□ 0.03
ZNF549Q6P9A3 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF549Q6P9A3 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
ZNF549Q6P9A3 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF549Q6P9A3 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
ZNF549Q6P9A3 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
ZNF549Q6P9A3 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC15.24■□□□□ 0.03
ZNF549Q6P9A3 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC15.24■□□□□ 0.03
ZNF549Q6P9A3 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF549Q6P9A3 CYMP-203ENST00000474680 1263 ntBASIC15.24■□□□□ 0.03
ZNF549Q6P9A3 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC15.24■□□□□ 0.03
ZNF549Q6P9A3 RARRES2P5-201ENST00000564013 466 ntBASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms