Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA4P78363 ACR-203ENST00000529621 708 ntTSL 5 BASIC13.2□□□□□ -0.3
ABCA4P78363 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
ABCA4P78363 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
ABCA4P78363 ZACNP1-201ENST00000612259 710 ntBASIC13.2□□□□□ -0.3
ABCA4P78363 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC13.2□□□□□ -0.3
ABCA4P78363 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC13.2□□□□□ -0.3
ABCA4P78363 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA4P78363 SUPT20HL2-201ENST00000486479 2409 ntBASIC13.2□□□□□ -0.3
ABCA4P78363 SLC9A7P1-201ENST00000554295 3311 ntBASIC13.2□□□□□ -0.3
ABCA4P78363 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA4P78363 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA4P78363 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
ABCA4P78363 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC13.2□□□□□ -0.3
ABCA4P78363 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC13.2□□□□□ -0.3
ABCA4P78363 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC13.2□□□□□ -0.3
ABCA4P78363 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA4P78363 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC13.2□□□□□ -0.3
ABCA4P78363 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA4P78363 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
ABCA4P78363 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA4P78363 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA4P78363 AL354989.2-201ENST00000435838 1540 ntBASIC13.19□□□□□ -0.3
ABCA4P78363 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC13.19□□□□□ -0.3
ABCA4P78363 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA4P78363 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA4P78363 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA4P78363 PAUPAR-201ENST00000630360 2965 ntBASIC13.19□□□□□ -0.3
ABCA4P78363 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC13.19□□□□□ -0.3
ABCA4P78363 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA4P78363 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA4P78363 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
ABCA4P78363 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
ABCA4P78363 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC13.19□□□□□ -0.3
ABCA4P78363 AC016700.1-201ENST00000429424 312 ntBASIC13.19□□□□□ -0.3
ABCA4P78363 FAM8A4P-201ENST00000435433 1213 ntBASIC13.19□□□□□ -0.3
ABCA4P78363 HIST2H2BB-201ENST00000449108 381 ntBASIC13.19□□□□□ -0.3
ABCA4P78363 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC13.19□□□□□ -0.3
ABCA4P78363 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA4P78363 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
ABCA4P78363 AC073413.1-201ENST00000603927 732 ntBASIC13.19□□□□□ -0.3
ABCA4P78363 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC13.19□□□□□ -0.3
ABCA4P78363 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
ABCA4P78363 AC148477.4-201ENST00000613430 1793 ntBASIC13.19□□□□□ -0.3
ABCA4P78363 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
ABCA4P78363 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA4P78363 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC13.19□□□□□ -0.3
ABCA4P78363 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA4P78363 AC008894.3-201ENST00000624324 3103 ntBASIC13.19□□□□□ -0.3
ABCA4P78363 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
ABCA4P78363 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
ABCA4P78363 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
ABCA4P78363 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA4P78363 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA4P78363 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA4P78363 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA4P78363 AC024909.3-201ENST00000611513 2257 ntBASIC13.19□□□□□ -0.3
ABCA4P78363 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
ABCA4P78363 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC13.19□□□□□ -0.3
ABCA4P78363 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
ABCA4P78363 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA4P78363 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC13.19□□□□□ -0.3
ABCA4P78363 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC13.19□□□□□ -0.3
ABCA4P78363 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC13.19□□□□□ -0.3
ABCA4P78363 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA4P78363 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA4P78363 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA4P78363 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA4P78363 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA4P78363 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC13.19□□□□□ -0.3
ABCA4P78363 SDHD-202ENST00000525291 790 ntTSL 3 BASIC13.19□□□□□ -0.3
ABCA4P78363 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC13.19□□□□□ -0.3
ABCA4P78363 CSH2-206ENST00000560142 749 ntTSL 5 BASIC13.19□□□□□ -0.3
ABCA4P78363 RN7SL574P-201ENST00000581512 297 ntBASIC13.19□□□□□ -0.3
ABCA4P78363 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
ABCA4P78363 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
ABCA4P78363 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA4P78363 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA4P78363 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA4P78363 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA4P78363 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC13.19□□□□□ -0.3
ABCA4P78363 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA4P78363 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC13.19□□□□□ -0.3
ABCA4P78363 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA4P78363 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA4P78363 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA4P78363 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA4P78363 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA4P78363 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC13.18□□□□□ -0.3
ABCA4P78363 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC13.18□□□□□ -0.3
ABCA4P78363 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
ABCA4P78363 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC13.18□□□□□ -0.3
ABCA4P78363 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
ABCA4P78363 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA4P78363 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA4P78363 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA4P78363 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
ABCA4P78363 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
ABCA4P78363 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
ABCA4P78363 SPTLC1P5-201ENST00000450718 252 ntBASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms