Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LMO4P61968 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC12.49□□□□□ -0.41
LMO4P61968 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LMO4P61968 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
LMO4P61968 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
LMO4P61968 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
LMO4P61968 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
LMO4P61968 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LMO4P61968 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LMO4P61968 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
LMO4P61968 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LMO4P61968 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LMO4P61968 HNRNPA1P32-201ENST00000396326 963 ntBASIC12.49□□□□□ -0.41
LMO4P61968 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LMO4P61968 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
LMO4P61968 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC12.49□□□□□ -0.41
LMO4P61968 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC12.49□□□□□ -0.41
LMO4P61968 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC12.49□□□□□ -0.41
LMO4P61968 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC12.49□□□□□ -0.41
LMO4P61968 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC12.49□□□□□ -0.41
LMO4P61968 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC12.49□□□□□ -0.41
LMO4P61968 ATP6V0CP2-201ENST00000469409 207 ntBASIC12.49□□□□□ -0.41
LMO4P61968 TPI1-206ENST00000488464 791 ntTSL 5 BASIC12.49□□□□□ -0.41
LMO4P61968 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LMO4P61968 SCARNA20.5-201ENST00000516991 142 ntBASIC12.49□□□□□ -0.41
LMO4P61968 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC12.49□□□□□ -0.41
LMO4P61968 NKG7-204ENST00000595217 816 ntTSL 2 BASIC12.49□□□□□ -0.41
LMO4P61968 AC007663.3-201ENST00000609632 465 ntBASIC12.49□□□□□ -0.41
LMO4P61968 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LMO4P61968 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LMO4P61968 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
LMO4P61968 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
LMO4P61968 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
LMO4P61968 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC12.49□□□□□ -0.41
LMO4P61968 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
LMO4P61968 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LMO4P61968 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LMO4P61968 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LMO4P61968 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LMO4P61968 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
LMO4P61968 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC12.48□□□□□ -0.41
LMO4P61968 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC12.48□□□□□ -0.41
LMO4P61968 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC12.48□□□□□ -0.41
LMO4P61968 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LMO4P61968 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
LMO4P61968 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC12.48□□□□□ -0.41
LMO4P61968 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LMO4P61968 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LMO4P61968 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC12.48□□□□□ -0.41
LMO4P61968 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
LMO4P61968 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LMO4P61968 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC12.48□□□□□ -0.41
LMO4P61968 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LMO4P61968 STRN-202ENST00000379213 2254 ntTSL 5 BASIC12.48□□□□□ -0.41
LMO4P61968 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC12.48□□□□□ -0.41
LMO4P61968 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
LMO4P61968 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LMO4P61968 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
LMO4P61968 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
LMO4P61968 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
LMO4P61968 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
LMO4P61968 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
LMO4P61968 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC12.48□□□□□ -0.41
LMO4P61968 CSH2-202ENST00000345366 598 ntTSL 5 BASIC12.48□□□□□ -0.41
LMO4P61968 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC12.48□□□□□ -0.41
LMO4P61968 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
LMO4P61968 SMS-201ENST00000379404 1174 ntTSL 3 BASIC12.48□□□□□ -0.41
LMO4P61968 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
LMO4P61968 AL354877.1-201ENST00000424412 413 ntBASIC12.48□□□□□ -0.41
LMO4P61968 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC12.48□□□□□ -0.41
LMO4P61968 FNTAP2-201ENST00000430308 634 ntBASIC12.48□□□□□ -0.41
LMO4P61968 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
LMO4P61968 BX284668.4-201ENST00000453917 508 ntBASIC12.48□□□□□ -0.41
LMO4P61968 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC12.48□□□□□ -0.41
LMO4P61968 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC12.48□□□□□ -0.41
LMO4P61968 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC12.48□□□□□ -0.41
LMO4P61968 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC12.48□□□□□ -0.41
LMO4P61968 MIR4683-201ENST00000579659 81 ntBASIC12.48□□□□□ -0.41
LMO4P61968 RPS15-202ENST00000585665 467 ntTSL 3 BASIC12.48□□□□□ -0.41
LMO4P61968 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC12.48□□□□□ -0.41
LMO4P61968 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC12.48□□□□□ -0.41
LMO4P61968 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LMO4P61968 HLA-DQB2-231ENST00000435145 2026 ntBASIC12.48□□□□□ -0.41
LMO4P61968 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
LMO4P61968 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC12.48□□□□□ -0.41
LMO4P61968 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
LMO4P61968 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
LMO4P61968 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC12.48□□□□□ -0.41
LMO4P61968 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LMO4P61968 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
LMO4P61968 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC12.48□□□□□ -0.41
LMO4P61968 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC12.48□□□□□ -0.41
LMO4P61968 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
LMO4P61968 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LMO4P61968 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
LMO4P61968 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LMO4P61968 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC12.47□□□□□ -0.41
LMO4P61968 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
LMO4P61968 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
LMO4P61968 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms