Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
CDH4P55283 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.64■□□□□ 0.09
CDH4P55283 SLC9A7P1-202ENST00000556476 2239 ntBASIC15.64■□□□□ 0.09
CDH4P55283 AC013268.4-201ENST00000637413 2228 ntBASIC15.64■□□□□ 0.09
CDH4P55283 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC15.64■□□□□ 0.09
CDH4P55283 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 AL157414.3-201ENST00000624276 1954 ntBASIC15.64■□□□□ 0.09
CDH4P55283 AP000845.1-201ENST00000581677 2131 ntBASIC15.64■□□□□ 0.09
CDH4P55283 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC15.64■□□□□ 0.09
CDH4P55283 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 ZBTB12BP-201ENST00000314232 1122 ntBASIC15.64■□□□□ 0.09
CDH4P55283 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
CDH4P55283 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
CDH4P55283 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC15.64■□□□□ 0.09
CDH4P55283 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC15.64■□□□□ 0.09
CDH4P55283 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC15.64■□□□□ 0.09
CDH4P55283 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC15.64■□□□□ 0.09
CDH4P55283 IGHV3-71-201ENST00000523324 359 ntBASIC15.64■□□□□ 0.09
CDH4P55283 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC15.64■□□□□ 0.09
CDH4P55283 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC15.64■□□□□ 0.09
CDH4P55283 RPL28-206ENST00000558752 671 ntTSL 3 BASIC15.64■□□□□ 0.09
CDH4P55283 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC15.64■□□□□ 0.09
CDH4P55283 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC15.64■□□□□ 0.09
CDH4P55283 AC017083.2-201ENST00000608069 979 ntBASIC15.64■□□□□ 0.09
CDH4P55283 AC132938.4-201ENST00000623835 848 ntBASIC15.64■□□□□ 0.09
CDH4P55283 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC15.64■□□□□ 0.09
CDH4P55283 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC15.64■□□□□ 0.09
CDH4P55283 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
CDH4P55283 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC15.64■□□□□ 0.09
CDH4P55283 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH4P55283 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
CDH4P55283 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDH4P55283 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDH4P55283 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC15.63■□□□□ 0.09
CDH4P55283 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDH4P55283 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
CDH4P55283 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CDH4P55283 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDH4P55283 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
CDH4P55283 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
CDH4P55283 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CDH4P55283 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDH4P55283 FOS-202ENST00000535987 1402 ntTSL 2 BASIC15.63■□□□□ 0.09
CDH4P55283 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDH4P55283 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDH4P55283 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC15.63■□□□□ 0.09
CDH4P55283 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC15.63■□□□□ 0.09
CDH4P55283 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDH4P55283 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDH4P55283 GUK1-206ENST00000366723 845 ntTSL 5 BASIC15.63■□□□□ 0.09
CDH4P55283 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.63■□□□□ 0.09
CDH4P55283 PES1-204ENST00000402284 2144 ntTSL 5 BASIC15.63■□□□□ 0.09
CDH4P55283 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC15.63■□□□□ 0.09
CDH4P55283 EIF3FP3-201ENST00000434851 1086 ntBASIC15.63■□□□□ 0.09
CDH4P55283 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC15.63■□□□□ 0.09
CDH4P55283 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDH4P55283 ATP5G2P4-201ENST00000442175 420 ntBASIC15.63■□□□□ 0.09
CDH4P55283 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC15.63■□□□□ 0.09
CDH4P55283 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC15.63■□□□□ 0.09
CDH4P55283 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CDH4P55283 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDH4P55283 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
CDH4P55283 NOP2-220ENST00000545915 630 ntTSL 2 BASIC15.63■□□□□ 0.09
CDH4P55283 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC15.63■□□□□ 0.09
CDH4P55283 DUX4L47-201ENST00000566374 394 ntBASIC15.63■□□□□ 0.09
CDH4P55283 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC15.63■□□□□ 0.09
CDH4P55283 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDH4P55283 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CDH4P55283 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms