Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC14.39□□□□□ -0.11
COL5A1P20908 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL5A1P20908 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL5A1P20908 AL360270.3-201ENST00000609118 1348 ntBASIC14.39□□□□□ -0.11
COL5A1P20908 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
COL5A1P20908 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
COL5A1P20908 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC14.39□□□□□ -0.11
COL5A1P20908 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
COL5A1P20908 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC14.39□□□□□ -0.11
COL5A1P20908 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL5A1P20908 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL5A1P20908 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC14.38□□□□□ -0.11
COL5A1P20908 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC14.38□□□□□ -0.11
COL5A1P20908 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC14.38□□□□□ -0.11
COL5A1P20908 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL5A1P20908 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC14.38□□□□□ -0.11
COL5A1P20908 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC14.38□□□□□ -0.11
COL5A1P20908 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL5A1P20908 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC14.38□□□□□ -0.11
COL5A1P20908 AL805961.1-201ENST00000642026 753 ntBASIC14.38□□□□□ -0.11
COL5A1P20908 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC14.38□□□□□ -0.11
COL5A1P20908 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL5A1P20908 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL5A1P20908 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL5A1P20908 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
COL5A1P20908 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL5A1P20908 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC14.38□□□□□ -0.11
COL5A1P20908 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC14.38□□□□□ -0.11
COL5A1P20908 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL5A1P20908 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL5A1P20908 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
COL5A1P20908 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC14.38□□□□□ -0.11
COL5A1P20908 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL5A1P20908 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
COL5A1P20908 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC14.38□□□□□ -0.11
COL5A1P20908 DNAJB1P1-201ENST00000429417 1024 ntBASIC14.38□□□□□ -0.11
COL5A1P20908 NDUFS6P1-201ENST00000485187 316 ntBASIC14.38□□□□□ -0.11
COL5A1P20908 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC14.38□□□□□ -0.11
COL5A1P20908 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
COL5A1P20908 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
COL5A1P20908 TPM1-223ENST00000560445 485 ntTSL 3 BASIC14.38□□□□□ -0.11
COL5A1P20908 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL5A1P20908 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC14.38□□□□□ -0.11
COL5A1P20908 RPL17P45-201ENST00000586289 509 ntBASIC14.38□□□□□ -0.11
COL5A1P20908 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC14.38□□□□□ -0.11
COL5A1P20908 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC14.38□□□□□ -0.11
COL5A1P20908 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL5A1P20908 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC14.38□□□□□ -0.11
COL5A1P20908 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL5A1P20908 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
COL5A1P20908 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL5A1P20908 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC14.38□□□□□ -0.11
COL5A1P20908 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL5A1P20908 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL5A1P20908 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC14.38□□□□□ -0.11
COL5A1P20908 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL5A1P20908 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL5A1P20908 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL5A1P20908 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC14.38□□□□□ -0.11
COL5A1P20908 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL5A1P20908 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL5A1P20908 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL5A1P20908 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL5A1P20908 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
COL5A1P20908 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL5A1P20908 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL5A1P20908 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC14.37□□□□□ -0.11
COL5A1P20908 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC14.37□□□□□ -0.11
COL5A1P20908 AC003102.2-201ENST00000589195 1469 ntBASIC14.37□□□□□ -0.11
COL5A1P20908 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL5A1P20908 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL5A1P20908 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL5A1P20908 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC14.37□□□□□ -0.11
COL5A1P20908 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC14.37□□□□□ -0.11
COL5A1P20908 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC14.37□□□□□ -0.11
COL5A1P20908 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL5A1P20908 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
COL5A1P20908 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC14.37□□□□□ -0.11
COL5A1P20908 AC234644.1-201ENST00000406065 370 ntBASIC14.37□□□□□ -0.11
COL5A1P20908 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC14.37□□□□□ -0.11
COL5A1P20908 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC14.37□□□□□ -0.11
COL5A1P20908 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC14.37□□□□□ -0.11
COL5A1P20908 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL5A1P20908 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC14.37□□□□□ -0.11
COL5A1P20908 IGHV3-37-201ENST00000518544 340 ntBASIC14.37□□□□□ -0.11
COL5A1P20908 POU5F1P2-201ENST00000521750 823 ntBASIC14.37□□□□□ -0.11
COL5A1P20908 AC135983.4-201ENST00000564116 1262 ntBASIC14.37□□□□□ -0.11
COL5A1P20908 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC14.37□□□□□ -0.11
COL5A1P20908 NAT9-211ENST00000580632 799 ntTSL 3 BASIC14.37□□□□□ -0.11
COL5A1P20908 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC14.37□□□□□ -0.11
COL5A1P20908 AC087481.3-201ENST00000602886 1894 ntBASIC14.37□□□□□ -0.11
COL5A1P20908 AC136621.1-201ENST00000624017 2304 ntBASIC14.37□□□□□ -0.11
COL5A1P20908 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL5A1P20908 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC14.37□□□□□ -0.11
COL5A1P20908 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL5A1P20908 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC14.37□□□□□ -0.11
COL5A1P20908 SLC9A7P1-202ENST00000556476 2239 ntBASIC14.37□□□□□ -0.11
COL5A1P20908 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL5A1P20908 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.37□□□□□ -0.11
COL5A1P20908 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms