Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A1P12109 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
COL6A1P12109 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A1P12109 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A1P12109 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.74■□□□□ 0.27
COL6A1P12109 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A1P12109 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A1P12109 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.74■□□□□ 0.27
COL6A1P12109 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A1P12109 OR2K2-202ENST00000374428 1038 ntBASIC16.74■□□□□ 0.27
COL6A1P12109 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A1P12109 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC16.74■□□□□ 0.27
COL6A1P12109 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC16.74■□□□□ 0.27
COL6A1P12109 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC16.74■□□□□ 0.27
COL6A1P12109 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A1P12109 HLA-K-203ENST00000430151 1046 ntBASIC16.74■□□□□ 0.27
COL6A1P12109 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC16.74■□□□□ 0.27
COL6A1P12109 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A1P12109 AC130709.1-201ENST00000484779 1212 ntBASIC16.74■□□□□ 0.27
COL6A1P12109 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC16.74■□□□□ 0.27
COL6A1P12109 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC16.74■□□□□ 0.27
COL6A1P12109 FOS-204ENST00000554617 796 ntTSL 2 BASIC16.74■□□□□ 0.27
COL6A1P12109 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC16.74■□□□□ 0.27
COL6A1P12109 AC002472.3-201ENST00000640124 621 ntBASIC16.74■□□□□ 0.27
COL6A1P12109 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC16.74■□□□□ 0.27
COL6A1P12109 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A1P12109 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A1P12109 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC16.74■□□□□ 0.27
COL6A1P12109 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A1P12109 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A1P12109 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A1P12109 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A1P12109 AMT-204ENST00000427987 1646 ntTSL 5 BASIC16.74■□□□□ 0.27
COL6A1P12109 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
COL6A1P12109 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A1P12109 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC16.73■□□□□ 0.27
COL6A1P12109 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
COL6A1P12109 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
COL6A1P12109 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A1P12109 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A1P12109 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
COL6A1P12109 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A1P12109 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A1P12109 AC018695.7-201ENST00000624587 2492 ntBASIC16.73■□□□□ 0.27
COL6A1P12109 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
COL6A1P12109 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC16.73■□□□□ 0.27
COL6A1P12109 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A1P12109 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.73■□□□□ 0.27
COL6A1P12109 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A1P12109 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.73■□□□□ 0.27
COL6A1P12109 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A1P12109 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC16.73■□□□□ 0.27
COL6A1P12109 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A1P12109 AC239868.1-201ENST00000369385 493 ntBASIC16.73■□□□□ 0.27
COL6A1P12109 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A1P12109 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A1P12109 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC16.73■□□□□ 0.27
COL6A1P12109 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC16.73■□□□□ 0.27
COL6A1P12109 RN7SL67P-201ENST00000492147 296 ntBASIC16.73■□□□□ 0.27
COL6A1P12109 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC16.73■□□□□ 0.27
COL6A1P12109 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC16.73■□□□□ 0.27
COL6A1P12109 AC026803.1-201ENST00000569130 274 ntBASIC16.73■□□□□ 0.27
COL6A1P12109 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC16.73■□□□□ 0.27
COL6A1P12109 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
COL6A1P12109 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC16.73■□□□□ 0.27
COL6A1P12109 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC16.73■□□□□ 0.27
COL6A1P12109 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A1P12109 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC16.73■□□□□ 0.27
COL6A1P12109 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A1P12109 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC16.73■□□□□ 0.27
COL6A1P12109 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC16.73■□□□□ 0.27
COL6A1P12109 AC007718.1-201ENST00000621078 280 ntBASIC16.73■□□□□ 0.27
COL6A1P12109 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.73■□□□□ 0.27
COL6A1P12109 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.73■□□□□ 0.27
COL6A1P12109 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.73■□□□□ 0.27
COL6A1P12109 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A1P12109 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A1P12109 FAM90A7P-201ENST00000382628 1395 ntBASIC16.73■□□□□ 0.27
COL6A1P12109 FAM90A23P-201ENST00000400136 1395 ntBASIC16.73■□□□□ 0.27
COL6A1P12109 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A1P12109 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.73■□□□□ 0.27
COL6A1P12109 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
COL6A1P12109 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
COL6A1P12109 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A1P12109 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.72■□□□□ 0.27
COL6A1P12109 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A1P12109 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A1P12109 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.72■□□□□ 0.27
COL6A1P12109 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A1P12109 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A1P12109 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC16.72■□□□□ 0.27
COL6A1P12109 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
COL6A1P12109 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.72■□□□□ 0.27
COL6A1P12109 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A1P12109 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A1P12109 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.72■□□□□ 0.27
COL6A1P12109 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A1P12109 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.72■□□□□ 0.27
COL6A1P12109 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.72■□□□□ 0.27
COL6A1P12109 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms