Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MSH4O15457 AC104989.1-201ENST00000519711 778 ntBASIC17.16■□□□□ 0.34
MSH4O15457 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC17.16■□□□□ 0.34
MSH4O15457 RPL8-205ENST00000527914 551 ntTSL 3 BASIC17.16■□□□□ 0.34
MSH4O15457 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC17.16■□□□□ 0.34
MSH4O15457 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC17.16■□□□□ 0.34
MSH4O15457 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC17.16■□□□□ 0.34
MSH4O15457 AL354718.3-201ENST00000616414 581 ntBASIC17.16■□□□□ 0.34
MSH4O15457 ETV2-208ENST00000621247 941 ntTSL 5 BASIC17.16■□□□□ 0.34
MSH4O15457 AC132938.4-201ENST00000623835 848 ntBASIC17.16■□□□□ 0.34
MSH4O15457 CR382287.1-201ENST00000623954 586 ntBASIC17.16■□□□□ 0.34
MSH4O15457 PFAS-212ENST00000625942 396 ntTSL 5 BASIC17.16■□□□□ 0.34
MSH4O15457 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH4O15457 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH4O15457 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
MSH4O15457 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MSH4O15457 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC17.16■□□□□ 0.34
MSH4O15457 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH4O15457 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
MSH4O15457 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH4O15457 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC17.16■□□□□ 0.34
MSH4O15457 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MSH4O15457 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.16■□□□□ 0.34
MSH4O15457 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH4O15457 AC023157.3-201ENST00000619086 2088 ntBASIC17.16■□□□□ 0.34
MSH4O15457 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
MSH4O15457 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH4O15457 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC17.15■□□□□ 0.34
MSH4O15457 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MSH4O15457 LINC00554-201ENST00000564841 3011 ntBASIC17.15■□□□□ 0.34
MSH4O15457 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MSH4O15457 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
MSH4O15457 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH4O15457 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH4O15457 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MSH4O15457 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH4O15457 PCDHGB8P-201ENST00000502926 1973 ntBASIC17.15■□□□□ 0.34
MSH4O15457 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
MSH4O15457 PARN-202ENST00000420015 2360 ntTSL 2 BASIC17.15■□□□□ 0.34
MSH4O15457 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
MSH4O15457 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH4O15457 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
MSH4O15457 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC17.15■□□□□ 0.34
MSH4O15457 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
MSH4O15457 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
MSH4O15457 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MSH4O15457 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MSH4O15457 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC17.15■□□□□ 0.34
MSH4O15457 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MSH4O15457 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MSH4O15457 GZMB-202ENST00000382540 816 ntTSL 5 BASIC17.15■□□□□ 0.34
MSH4O15457 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MSH4O15457 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC17.15■□□□□ 0.34
MSH4O15457 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC17.15■□□□□ 0.34
MSH4O15457 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MSH4O15457 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC17.15■□□□□ 0.34
MSH4O15457 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC17.15■□□□□ 0.34
MSH4O15457 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MSH4O15457 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC17.15■□□□□ 0.34
MSH4O15457 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC17.15■□□□□ 0.34
MSH4O15457 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC17.15■□□□□ 0.34
MSH4O15457 RPL28-206ENST00000558752 671 ntTSL 3 BASIC17.15■□□□□ 0.34
MSH4O15457 AC004466.1-201ENST00000599515 1080 ntBASIC17.15■□□□□ 0.34
MSH4O15457 MIR6805-201ENST00000615055 62 ntBASIC17.15■□□□□ 0.34
MSH4O15457 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH4O15457 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC17.15■□□□□ 0.34
MSH4O15457 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MSH4O15457 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH4O15457 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
MSH4O15457 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MSH4O15457 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MSH4O15457 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH4O15457 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH4O15457 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH4O15457 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC17.15■□□□□ 0.34
MSH4O15457 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MSH4O15457 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSH4O15457 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSH4O15457 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC17.14■□□□□ 0.33
MSH4O15457 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC17.14■□□□□ 0.33
MSH4O15457 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
MSH4O15457 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSH4O15457 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
MSH4O15457 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSH4O15457 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
MSH4O15457 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC17.14■□□□□ 0.33
MSH4O15457 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC17.14■□□□□ 0.33
MSH4O15457 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.14■□□□□ 0.33
MSH4O15457 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
MSH4O15457 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC17.14■□□□□ 0.33
MSH4O15457 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSH4O15457 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSH4O15457 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
MSH4O15457 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC17.14■□□□□ 0.33
MSH4O15457 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC17.14■□□□□ 0.33
MSH4O15457 AL590640.2-201ENST00000457038 527 ntBASIC17.14■□□□□ 0.33
MSH4O15457 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSH4O15457 AC026434.2-201ENST00000506094 1078 ntBASIC17.14■□□□□ 0.33
MSH4O15457 AC078819.1-201ENST00000547454 765 ntBASIC17.14■□□□□ 0.33
MSH4O15457 AC012085.1-201ENST00000548270 765 ntBASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms