Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 SPDYE22P-201ENST00000582158 798 ntBASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 AC007431.3-201ENST00000623221 587 ntBASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 ZBED1P1-201ENST00000502364 1930 ntBASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 REXO1L2P-201ENST00000425429 2069 ntBASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 INTS4P2-202ENST00000614726 2019 ntBASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 AC004066.1-201ENST00000502488 802 ntBASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 AC008494.3-201ENST00000606615 944 ntBASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 AC105233.6-201ENST00000642093 218 ntBASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 AC012508.2-201ENST00000567613 1472 ntBASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 AL138799.1-201ENST00000448213 1675 ntBASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ATG4BQ9Y4P1 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms