Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 MIR770-201ENST00000390219 98 ntBASIC12.48□□□□□ -0.41
FOXA2Q9Y261 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 SLED1-202ENST00000512051 380 ntBASIC12.48□□□□□ -0.41
FOXA2Q9Y261 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 AC005498.2-205ENST00000593218 784 ntBASIC12.48□□□□□ -0.41
FOXA2Q9Y261 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC12.48□□□□□ -0.41
FOXA2Q9Y261 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 REXO1L2P-201ENST00000425429 2069 ntBASIC12.48□□□□□ -0.41
FOXA2Q9Y261 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 SYS1-203ENST00000414310 795 ntTSL 3 BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 SDHAP3-202ENST00000515467 728 ntBASIC12.47□□□□□ -0.41
FOXA2Q9Y261 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 AC015910.1-201ENST00000579400 975 ntBASIC12.47□□□□□ -0.41
FOXA2Q9Y261 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 AC007191.1-201ENST00000623179 2995 ntBASIC12.47□□□□□ -0.41
FOXA2Q9Y261 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA2Q9Y261 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 853.7 ms