Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 CICP11-201ENST00000434745 2827 ntBASIC28.84■■■□□ 2.21
SHROOM4Q9ULL8 AP005117.1-202ENST00000581724 1908 ntBASIC28.84■■■□□ 2.21
SHROOM4Q9ULL8 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC28.84■■■□□ 2.21
SHROOM4Q9ULL8 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC28.84■■■□□ 2.21
SHROOM4Q9ULL8 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC28.84■■■□□ 2.21
SHROOM4Q9ULL8 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC28.84■■■□□ 2.21
SHROOM4Q9ULL8 CHMP1AP1-201ENST00000445563 662 ntBASIC28.84■■■□□ 2.21
SHROOM4Q9ULL8 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC28.84■■■□□ 2.21
SHROOM4Q9ULL8 RN7SL8P-201ENST00000461771 266 ntBASIC28.84■■■□□ 2.21
SHROOM4Q9ULL8 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC28.84■■■□□ 2.21
SHROOM4Q9ULL8 AC106820.3-201ENST00000561653 397 ntBASIC28.84■■■□□ 2.21
SHROOM4Q9ULL8 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC28.84■■■□□ 2.21
SHROOM4Q9ULL8 AC006453.1-201ENST00000636037 1257 ntBASIC28.84■■■□□ 2.21
SHROOM4Q9ULL8 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC28.84■■■□□ 2.21
SHROOM4Q9ULL8 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC28.84■■■□□ 2.21
SHROOM4Q9ULL8 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 AL157414.3-201ENST00000624276 1954 ntBASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 KRT8P29-201ENST00000420409 1371 ntBASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 TPM3P8-201ENST00000330554 643 ntBASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 AC242376.1-201ENST00000559033 726 ntBASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 AC005357.2-202ENST00000590507 1060 ntBASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC28.83■■■□□ 2.21
SHROOM4Q9ULL8 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC28.82■■■□□ 2.2
SHROOM4Q9ULL8 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
SHROOM4Q9ULL8 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
SHROOM4Q9ULL8 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC28.82■■■□□ 2.2
SHROOM4Q9ULL8 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC28.82■■■□□ 2.2
SHROOM4Q9ULL8 AC114812.1-204ENST00000449669 728 ntBASIC28.82■■■□□ 2.2
SHROOM4Q9ULL8 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC28.82■■■□□ 2.2
SHROOM4Q9ULL8 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC28.82■■■□□ 2.2
SHROOM4Q9ULL8 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
SHROOM4Q9ULL8 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC28.82■■■□□ 2.2
SHROOM4Q9ULL8 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC28.82■■■□□ 2.2
SHROOM4Q9ULL8 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC28.82■■■□□ 2.2
SHROOM4Q9ULL8 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC28.82■■■□□ 2.2
SHROOM4Q9ULL8 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
SHROOM4Q9ULL8 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC28.82■■■□□ 2.2
SHROOM4Q9ULL8 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC28.81■■■□□ 2.2
SHROOM4Q9ULL8 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC28.81■■■□□ 2.2
SHROOM4Q9ULL8 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC28.81■■■□□ 2.2
SHROOM4Q9ULL8 LRRC59-203ENST00000576448 1531 ntBASIC28.81■■■□□ 2.2
SHROOM4Q9ULL8 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
SHROOM4Q9ULL8 SLC9A7P1-202ENST00000556476 2239 ntBASIC28.81■■■□□ 2.2
SHROOM4Q9ULL8 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
SHROOM4Q9ULL8 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC28.81■■■□□ 2.2
SHROOM4Q9ULL8 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC28.81■■■□□ 2.2
SHROOM4Q9ULL8 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC28.81■■■□□ 2.2
SHROOM4Q9ULL8 PFN2-202ENST00000423691 911 ntTSL 2 BASIC28.81■■■□□ 2.2
SHROOM4Q9ULL8 FGFR3P1-201ENST00000449999 601 ntBASIC28.81■■■□□ 2.2
SHROOM4Q9ULL8 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC28.81■■■□□ 2.2
SHROOM4Q9ULL8 PTK2-225ENST00000520892 571 ntTSL 4 BASIC28.81■■■□□ 2.2
SHROOM4Q9ULL8 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC28.81■■■□□ 2.2
SHROOM4Q9ULL8 AL805961.1-203ENST00000641078 1258 ntBASIC28.81■■■□□ 2.2
SHROOM4Q9ULL8 KRT8P14-201ENST00000414254 1442 ntBASIC28.81■■■□□ 2.2
SHROOM4Q9ULL8 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
SHROOM4Q9ULL8 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC28.81■■■□□ 2.2
SHROOM4Q9ULL8 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC28.81■■■□□ 2.2
SHROOM4Q9ULL8 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC28.81■■■□□ 2.2
SHROOM4Q9ULL8 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC28.8■■■□□ 2.2
SHROOM4Q9ULL8 AC105250.1-201ENST00000509378 2057 ntBASIC28.8■■■□□ 2.2
SHROOM4Q9ULL8 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
SHROOM4Q9ULL8 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC28.8■■■□□ 2.2
SHROOM4Q9ULL8 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
SHROOM4Q9ULL8 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC28.8■■■□□ 2.2
SHROOM4Q9ULL8 NPPA-201ENST00000376476 728 ntTSL 3 BASIC28.8■■■□□ 2.2
SHROOM4Q9ULL8 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC28.8■■■□□ 2.2
SHROOM4Q9ULL8 POM121L8P-201ENST00000417732 1281 ntBASIC28.8■■■□□ 2.2
SHROOM4Q9ULL8 HLA-K-203ENST00000430151 1046 ntBASIC28.8■■■□□ 2.2
SHROOM4Q9ULL8 POM121L9P-203ENST00000441984 1285 ntBASIC28.8■■■□□ 2.2
SHROOM4Q9ULL8 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC28.8■■■□□ 2.2
SHROOM4Q9ULL8 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC28.8■■■□□ 2.2
SHROOM4Q9ULL8 SAMD11P1-201ENST00000571429 661 ntBASIC28.8■■■□□ 2.2
SHROOM4Q9ULL8 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC28.8■■■□□ 2.2
SHROOM4Q9ULL8 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
SHROOM4Q9ULL8 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
SHROOM4Q9ULL8 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
SHROOM4Q9ULL8 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms